read_and_preprocess_data: Function to read data and perform initial pre-processing

In DGEAR: Differential Gene Expression Analysis with R

Function to read data and perform initial pre-processing

Description

Function to read data and perform initial pre-processing

Usage

read_and_preprocess_data(
  datafile,
  con1,
  con2,
  exp1,
  exp2,
  alpha = 0.05,
  votting_cutoff = 2
)

Arguments

datafile	A matrix or data frame containing gene expression data
con1	Starting column of the control of the expression data
con2	Ending column of the control of the expression data
exp1	Starting column of the experiment of the expression data
exp2	Ending column of the experiment of the expression data
alpha	Value of significance level ranging from 0 to 1 (0.05 states 5 % significance)(Default = 0.05).
votting_cutoff	A numeric value serves as Majority voting (Default = 2)

Value

A large list containing the data file and the input values

Examples

data("gene_exp_data")
read_and_preprocess_data(datafile = gene_exp_data, con1=1,con2=10,exp1=11,exp2=20)

DGEAR documentation built on June 27, 2024, 1:07 a.m.