initDGEobjDef | R Documentation |
Instantiate a class DGEobjDef object.
initDGEobjDef(levels, primaryAssayNames, types, uniqueTypes)
levels |
A character string or vector providing names for new levels |
primaryAssayNames |
A character string or vector, must be the same length as levels This argument supplies the primaryAssayNames for the corresponding levels. |
types |
A named character vector of new types where the values indicate the basetype for each named type (optional) |
uniqueTypes |
A name or vector of names to add to the uniqueType list (optional) |
A class DGEobjDef object suitable for use with initDGEobj
# return the default DGEobj definition myDGEobjDef <- initDGEobjDef() # Optionally add some new types and levels for metabolomics data myDGEobjDef <- initDGEobjDef(levels = "metabolomics", primaryAssayNames = "intensity", types <- c(normalizedIntensity = "assay")) # When a new level is defined, the itemNames and types for the # rowData and colData are automatically established. The # types argument is only needed to define downstream workflow objects.
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