BLCA: Single paired M-values of BLCA chr18 from TCGA

In DMRMark: DMR Detection by Non-Homogeneous Hidden Markov Model from Methylation Array Data

Description

This data set contains one pair of M-values of BLCA chr18 from The Cancer Genome Atlas TCGA (TCGA). In addition, it contains the distance between each probes and the gold standard methylation status getting by the matched WGBS data (also from TCGA).

Usage

data(BLCA)

Format

A List with the following items, all items will length 5492 corresponding to the Illumina 450K probes on chr18:

mv

A matrix with one pair of M-values

distance

a numeric vector of the probe distance

truth

a binary vector represents the WGBS methylation status (0-nDML, 1-DML)

Source

Data generated by the TCGA Research Network: <http://cancergenome.nih.gov/>

Examples

data(BLCA)

DMRMark documentation built on May 2, 2019, 1:53 p.m.