API for DOBAD
Analysis of Discretely Observed Linear Birth-and-Death(-and-Immigration) Markov Chains

Global functions
ARsim Man page Source code
ARsimTime Source code
ARsimTime1 Source code
BD.MCMC.SC Man page Source code
BD.MCMC.SC.CTMC_PO_1 Source code
BD.MCMC.SC.CTMC_PO_many Source code
BDMC-class Man page
BDMC_many-class Man page
BDPOloglikeGradSqr.CTMC_PO_1 Source code
BDPOloglikeGradSqr.CTMC_PO_many Man page Source code
BDloglikelihood.PO Man page Source code
BDloglikelihood.PO.CTMC_PO_1 Man page Source code
BDloglikelihood.PO.CTMC_PO_many Man page Source code
BDloglikelihood.PO.cov Source code
BDloglikelihood.PO.cov.helper Source code
BDloglikelihood.PO.list Man page Source code
BDsummaryStats Man page
BDsummaryStats,BDMC-method Man page
BDsummaryStats,BDMC_many-method Man page
BDsummaryStats,list-method Man page
BDsummaryStats.PO Man page
BDsummaryStats.PO,CTMC_PO_1-method Man page
BDsummaryStats.PO,CTMC_PO_many-method Man page
BDsummaryStats.PO,list-method Man page
CTMC-class Man page
CTMC.simulate Man page Source code
CTMC.simulate.piecewise Man page Source code
CTMC2list Man page Source code
CTMCPO2indepIntervals Man page Source code
CTMCPO2indepIntervals.CTMC_PO_1 Man page Source code
CTMCPO2indepIntervals.CTMC_PO_many Man page Source code
CTMC_PO_1-class Man page
CTMC_PO_many-class Man page
E.step Source code
E.step.SC Man page Source code
E.step.SC.CTMC_PO_1 Source code
E.step.SC.CTMC_PO_many Source code
E.step.SC.cov Source code
E.step.SC.list Source code
EM.BD Source code
EM.BD.1.CTMC_PO_1 Source code
EM.BD.1.CTMC_PO_many Source code
EM.BD.SC Man page Source code
EM.BD.SC.1 Man page Source code
EM.BD.SC.cov.1sv Man page Source code
H Source code
M.step Source code
M.step.SC Man page Source code
M.step.SC.cov Source code
NRrootfinder Source code
Nij Man page Source code
NijBD Man page Source code
NijBD.CTMC_many Man page Source code
Nminus Man page Source code
Nminus.CTMC_PO_many Man page Source code
Nplus Man page Source code
Nplus.CTMC_PO_many Man page Source code
Pij.C Source code
Pij.D Source code
Pij.E Source code
Pij.F Source code
Qexact Source code
[,CTMC_PO_many,ANY,ANY,ANY-method Man page
[,CTMC_PO_many-method Man page
[,CTMC_many,ANY,ANY,ANY-method Man page
[,CTMC_many-method Man page
[[,CTMC_PO_many,ANY,ANY,ANY-method Man page
[[,CTMC_PO_many-method Man page
[[,CTMC_many,ANY,ANY,ANY-method Man page
[[,CTMC_many-method Man page
acceptcounts Source code
acceptcounts.1 Source code
add.cond.mean.many Man page Source code
add.cond.mean.one Man page Source code
add.cond.meanSq.one Man page Man page Source code
add.generator Man page Source code
add.joint.mean.many Man page Source code
add.joint.mean.one Man page Source code
add.joint.meanSq.one Man page Man page Source code
add.uncond.mean.one Man page Source code
add.uneven Source code
add.uneven.list Source code
add.uneven.matrix Source code
add.uneven.vector Source code
addhold.cond.mean.one Man page Source code
addhold.generator Man page Source code
addhold.joint.mean.one Man page Source code
addrem.cond.mean.one Man page Source code
addrem.generator Man page Source code
addrem.joint.mean.one Man page Source code
addremhold.generator Man page Source code
all.cond.mean.PO Man page Source code
all.cond.mean2.PO Man page Source code
avgNis Source code
bdARsimCondEnd Man page Source code
bdARsimCondEnd.1 Man page Source code
birth.death.simulant Man page Source code
chooseSim.condBD.1 Source code
chooseSim.condBD.1.CTMC_PO_1 Source code
chooseSim.condBD.CTMC_PO_1 Source code
combineCTMC Man page Source code
condIndices Source code
derivType Man page Source code
exactSimTime Source code
exactSimTime1 Source code
f.i Man page Source code
f.i.notNormalized Source code
firstJtimeCond Source code
genDoneSided Man page Source code Source code
getBDMCsPOlist Man page
getBDMCsPOlist,CTMC_PO_many-method Man page
getBDMCsPOlist-methods Man page
getBDinform.PO Man page
getBDinform.PO.0term.CTMC_1 Source code
getBDinform.PO.0term.CTMC_PO_many Source code
getBDinform.PO.SC Man page Source code
getBDinform.PO.SC.cov Source code
getBDinform.PO.SC.cov.numeric Source code
getBDinform.PO.SC.manual Man page Source code
getBDinform.cov.numeric Source code
getBDinform.full.SC.manual Man page Source code
getBDinform.lost.SC.manual Man page Source code
getBDinform.numeric Source code
getBDjTimes Man page Source code
getBDsummaryExpecs Man page Source code
getBDsummaryProdExpecs Man page Source code
getCommonTerms Source code
getDataSummary Man page
getDataSummary.CTMC_PO_many Man page Source code
getInitParams Man page Source code
getIthJumpTime Man page Source code
getIthJumpTimes Man page Source code
getIthState Man page Source code
getLhat Source code
getMCstate Man page Source code
getNewParams.CTMC_PO_1 Source code
getNewParams.CTMC_PO_many Source code
getNewParams.SC Man page Source code
getNewParams.SC.CTMC_PO_1 Source code
getNewParams.SC.CTMC_PO_many Source code
getNewParams.SC.cov Source code
getNewParams.SC.list Source code
getNuHat Source code
getPartialData Man page Source code
getStates Man page
getStates,BDMC-method Man page
getStates,CTMC-method Man page
getStates,CTMC_PO_1-method Man page
getSubMC Man page Source code
getSumTerm Source code
getT Man page
getT,BDMC-method Man page
getT,BDMC_many-method Man page
getT,CTMC-method Man page
getT,CTMC_PO_1-method Man page
getT,CTMC_PO_many-method Man page
getT,CTMC_many-method Man page
getT-methods Man page
getTimes Man page
getTimes,BDMC-method Man page
getTimes,CTMC-method Man page
getTimes,CTMC_PO_1-method Man page
getTs Man page
getTs,BDMC_many-method Man page
getTs,CTMC_PO_many-method Man page
getTs,CTMC_many-method Man page
getTs-methods Man page
graph.CTMC Man page Source code
graph.CTMC.PO Man page Source code
hessianOneSided Man page Source code Source code
hold.cond.mean.one Man page
hold.cond.meanSq.one Man page Source code
hold.generator Man page Source code
hold.joint.meanSq.one Man page Source code
hold.uncond.mean.one Man page Source code
holdTime Man page Source code
indicesCondSuffStats Source code
list2CTMC Man page Source code
logL.birth Source code
logL.birth.d2Nu2.MLE Source code
logL.birth.dNu.MLE Source code
logL.birth.nu.MLE Source code
logLvec Source code
num.2deriv Source code Source code
num.deriv Man page Source code Source code
num.deriv2 Source code Source code
p.i Man page Source code
pi.j.C Source code
pi.j.D Source code
pi.j.E Source code
pi.j.F Source code
plot,CTMC,missing-method Man page
plot,CTMC_PO_1,missing-method Man page
plot-methods Man page
poch Source code
power.coef.many Man page Source code
power.coef.one Man page Source code
prec.error.handler Source code
process.generator Man page Source code
process.generator.ratesEqual Source code
process.prob.many Man page Source code
process.prob.one Man page Source code
process.prob.one.fft Source code
process.prob.one.singlearg Source code
rem.cond.mean.many Man page Source code
rem.cond.mean.one Man page Source code
rem.cond.meanSq.one Man page Source code
rem.generator Man page Source code
rem.joint.mean.many Man page Source code
rem.joint.mean.one Man page Source code
rem.joint.meanSq.one Man page Source code
rem.uncond.mean.one Man page Source code
remhold.cond.mean.one Man page Source code
remhold.generator Man page Source code
remhold.joint.mean.one Man page Source code
sampleJumpTime2 Man page Source code
sim.condBD Man page Source code
sim.condBD.1 Man page Source code
sim.condBD.main Man page Source code
sim.condBD.main.CTMC_PO_1 Man page Source code
sim.condBD.main.default Man page
sim.condBD.main.list Man page Source code
simplify Man page Source code
solveNuHat Source code
template.cond.factorialmean.one Source code
template.cond.mean.one Source code
template.cond.prodmean.one Source code
timeave.cond.mean.many Man page Source code
timeave.cond.mean.one Man page
timeave.joint.mean.many Man page Source code
timeave.joint.mean.one Man page Source code
timeave.laplace Man page Source code
waitTimes Man page Source code
DOBAD documentation built on Dec. 8, 2017, 1:04 a.m.