Man pages for DOBAD
Analysis of Discretely Observed Linear Birth-and-Death(-and-Immigration) Markov Chains
| add.generator | Generating functions for birth-death processes with... |
| add.joint.mean.many | Mean counts and particle time averages for birth-death... |
| add.uncond.mean.one | ENplus, ENminus, Eholdtime, unconditional on ending state. |
| ARsim | Accept-Reject Simulation |
| bdARsimCondEnd | Conditional Simulation of BD via Accept-Reject |
| BD.EMInference.prodExpecs | Functions That Calculate Product Expectations Needed for... |
| BDloglikelihood.PO | Calculate log likelihood of Partially Observed BD process |
| BDMC-class | Class "BDMC" |
| BDMC_many-class | Class '"BDMC_many"' |
| BD.MCMC.SC | MCMC on Linear Birth Death Process |
| BDPOloglikeGradSqr.CTMC_PO_many | Gradient-Squared of PartialData likelihood |
| BDsummaryStats | Get summary statistics for EM Algorithm on Linear Birth-Death... |
| birth.death.simulant | Simulation of birth-death processes with immigration |
| bracket-methods | Methods for Function '[' in Package 'DOBAD' |
| combineCTMC | Combine several CTMCs into one CTMC |
| CTMC2list | Convert Between two representations of a Continuous Time... |
| CTMC-class | Class "CTMC" |
| CTMC_PO_1-class | Class "CTMC_PO_1" |
| CTMCPO2indepIntervals | Converts CTMC_PO (either CTMC_PO_1 or CTMC_PO_many) to... |
| CTMC_PO_many-class | Class "CTMC_PO_many" |
| CTMC.simulate | Simulate from ("regular") CTMC |
| CTMC.simulate.piecewise | Simulate from piecewise constant/homogeneous CTMC |
| derivType | Helper for getting means from generating functions |
| doublebracket-methods | Methods for Function '[[' in Package 'DOBAD' |
| EM.BD.SC | Expectation-Maximization on Linear Birth Death (_S_pecial... |
| EM.BD.SC.cov.1sv | Expectation-Maximization on Linear Birth Death (and... |
| EMutilities | Functions related to implementing the EM algorithm on... |
| getBDinform | Helpers for Getting Information Matrix for MLE estimates on... |
| getBDinform.PO | Get Information Matrix for MLE estimates on Partially... |
| getBDjTimes | Get Jump times of a BD process. |
| getBDMCsPOlist-methods | Methods for Function 'getBDMCsPOlist' in Package 'DOBAD' |
| getDataSummary.CTMC_PO_many | Calculate Some Summarizing Information for the Given Data |
| getInitParams | Get multiple starting parameters for EM |
| getIthJumpTime | Get the jump times from a CTMC. |
| getMCstate | Get the state of a CTMC at various times |
| getNewParams.SC | Solve for new parameters in restricted model in EM algorithm. |
| getPartialData | Get "partially Observed " Chain from a fully observed one. |
| getStates | Get list of jump states. |
| getSubMC | Extract a Sub Markov Chain |
| getTimes | Get list of jump times. |
| getT-methods | ~~ Methods for Function getT in Package 'DOBAD' ~~ |
| getTs-methods | ~~ Methods for Function getTs in Package 'DOBAD' ~~ |
| graph.CTMC | Plot CTMCs (possibly Partially Observed) |
| list2CTMC | Convert a list representation of a CTMC to the class version |
| Nij | Count transitions in a fully observed CTMC. |
| Nplus | Calculate summary statistics for BDMCs and CTMC_POs |
| num.deriv | Numerical Differentiation |
| plot-methods | Plot CTMCs |
| power.coef.one | Gets coefficients of a power series.. |
| process.prob.one | Calculate transition probability for linear birth death... |
| sampleJumpTime | Functions for Simulating Conditionally the first Jump of a... |
| sim.condBD | Simulate birth-death process, Conditionally upon observing... |
| simplify | Transform Lists to Vectors |
| sub-methods | Subscripting CTMCs |
