Man pages for DSAIDE
Dynamical Systems Approach to Infectious Disease Epidemiology (Ecology/Evolution)

DSAIDEDSAIDE: A package to learn about Dynamical Systems Approaches...
dsaidemenuThe main menu for the DSAIDE package
flu1918data1918 Influenza mortality data
generate_documentationA helper function which processes and displays the...
generate_fctcallA helper function that produces a call to a simulator...
generate_ggplotA helper function that takes simulation results and produces...
generate_plotlyA helper function that takes simulation results and produces...
generate_shinyinputA helper function that takes a model and generates shiny UI...
generate_textA helper function that takes result from the simulators and...
norodataCases of norovirus during an outbreak
run_modelA function that runs an app for specific settings and...
simulate_directtransmission_odeSimulation of a compartmental infectious disease transmission...
simulate_environmentaltransmission_odeEnvironmental Transmission model
simulate_evolution_stochasticStochastic simulation of a compartmental SIR-type model with...
simulate_fit_fluFitting a SIR-type model to flu data
simulate_fit_noroFitting a simple SIR type model to norovirus outbreak data
simulate_heterogeneity_odeSimulation of a compartmental infectious disease transmission...
simulate_idcharacteristics_odeSimulation of an infectious disease transmission model with...
simulate_idcontrolmultioutbreak_odeSimulation of a compartmental infectious disease transmission...
simulate_idcontrol_odeSimulation of a compartmental infectious disease transmission...
simulate_idpatterns_odeSimulation of a compartmental infectious disease transmission...
simulate_idsurveillance_odeSimulation of a compartmental infectious disease transmission...
simulate_maternalimmunity_odeSimulation of a MSEIR model that represents a group of the...
simulate_modelexploration_sirSimulation to illustrate parameter scan of the basic SIR...
simulate_multipathogen_odeSimulation of a compartmental infectious disease transmission...
simulate_parasites_odeSimulation of a compartmental infectious disease transmission...
simulate_reproductivenumber1_odeBasic SIR model
simulate_reproductivenumber2_odeSimulation of a compartmental infectious disease transmission...
simulate_seir_stochasticStochastic simulation of an SEIR-type model
simulate_sirdemographic_odeBasic SIR model with births and deaths
simulate_sirdemographic_stochasticStochastic simulation of an SIR-type model with births and...
simulate_sir_discreteBasic discrete time SIR model
simulate_sir_odeBasic SIR model
simulate_usanalysis_sirSimulation to illustrate uncertainty and sensitivity analysis
simulate_vectortransmission_odeVector transmission model
DSAIDE documentation built on Jan. 9, 2020, 1:06 a.m.