Files in DSAIDE
Dynamical Systems Approach to Infectious Disease Epidemiology (Ecology/Evolution)

MD5
NEWS.md
NAMESPACE
DESCRIPTION
R/generate_text.R R/generate_plotly.R R/simulate_SIR_modelexploration.R R/simulate_flu_fit.R R/simulate_multipathogen_ode.R R/simulate_noro_fit.R R/dsaidemenu.R R/simulate_SIR_model_ode.R R/data.R R/simulate_idcontrolmultioutbreak_ode.R R/simulate_Drug_Resistance_Evolution_stochastic.R R/generate_ggplot.R R/simulate_idvaccine_ode.R R/generate_fctcall.R R/simulate_SIR_usanalysis.R R/simulate_idcontrolmultigroup_ode.R R/simulate_SIR_model_discrete.R R/simulate_Complex_ID_Control_ode.R R/simulate_directtransmission_ode.R R/generate_documentation.R R/generate_shinyinput.R R/simulate_SIRSd_model_ode.R R/simulate_Vector_transmission_model_ode.R R/simulate_Characteristics_of_ID_ode.R R/simulate_Host_Heterogeneity_Model_ode.R R/run_model.R R/simulate_Environmental_Transmission_model_ode.R R/DSAIDE-package.R R/simulate_SIRSd_model_stochastic.R R/simulate_SEIRSd_model_stochastic.R R/simulate_idsurveillance_ode.R R/simulate_idpatterns_ode.R
inst/CITATION
inst/doc/DSAIDE.R inst/doc/DSAIDE.Rmd
inst/doc/DSAIDE.html
inst/appinformation/reproductivenumber1_documentation.Rmd
inst/appinformation/idsurveillance_tasktable.tsv
inst/appinformation/apptable.tsv
inst/appinformation/environmentaltransmission_documentation.html
inst/appinformation/vectortransmission_documentation.html
inst/appinformation/usanalysis_documentation.html
inst/appinformation/modelexploration_documentation.Rmd
inst/appinformation/directtransmission_documentation.html
inst/appinformation/fitflu_documentation.Rmd
inst/appinformation/fitnoro_documentation.html
inst/appinformation/idcontrolvaccine_documentation.Rmd inst/appinformation/startup_script.R inst/appinformation/reproductivenumber2_documentation.Rmd
inst/appinformation/stochasticseir_tasktable.tsv
inst/appinformation/environmentaltransmission_documentation.Rmd inst/appinformation/idcontrolmultigroup_documentation.Rmd
inst/appinformation/vectortransmission_tasktable.tsv
inst/appinformation/idcontrolmultigroup_documentation.html
inst/appinformation/idcontrolvaccine_documentation.html
inst/appinformation/usanalysis_documentation.Rmd
inst/appinformation/idcontrolcomplex_tasktable.tsv
inst/appinformation/evolution_tasktable.tsv
inst/appinformation/evolution_documentation.html
inst/appinformation/modelexploration_tasktable.tsv
inst/appinformation/basicsir_documentation.html
inst/appinformation/reproductivenumber1_tasktable.tsv
inst/appinformation/fitflu_documentation.html
inst/appinformation/hostheterogeneity_documentation.Rmd
inst/appinformation/idsurveillance_documentation.html
inst/appinformation/fitnoro_documentation.Rmd inst/appinformation/idcharacteristics_documentation.Rmd
inst/appinformation/stochasticsir_tasktable.tsv
inst/appinformation/stochasticseir_documentation.Rmd inst/appinformation/basicsir_documentation.Rmd
inst/appinformation/idcharacteristics_documentation.html
inst/appinformation/environmentaltransmission_tasktable.tsv
inst/appinformation/idsurveillance_documentation.Rmd inst/appinformation/multipathogen_documentation.Rmd
inst/appinformation/multipathogen_documentation.html
inst/appinformation/idcontrolcomplex_documentation.html
inst/appinformation/dsaide_references.bib
inst/appinformation/stochasticsir_documentation.html
inst/appinformation/idpatterns_documentation.html
inst/appinformation/fitflu_tasktable.tsv
inst/appinformation/idcharacteristics_tasktable.tsv
inst/appinformation/hostheterogeneity_tasktable.tsv
inst/appinformation/idcontrolmultioutbreak_documentation.html
inst/appinformation/usanalysis_tasktable.tsv
inst/appinformation/reproductivenumber2_tasktable.tsv
inst/appinformation/idcontrolvaccine_tasktable.tsv
inst/appinformation/idcontrolmultioutbreak_tasktable.tsv
inst/appinformation/hostheterogeneity_documentation.html
inst/appinformation/reproductivenumber2_documentation.html
inst/appinformation/idpatterns_tasktable.tsv
inst/appinformation/multipathogen_tasktable.tsv
inst/appinformation/idcontrolcomplex_documentation.Rmd inst/appinformation/idpatterns_documentation.Rmd
inst/appinformation/basicsir_tasktable.tsv
inst/appinformation/reproductivenumber1_documentation.html
inst/appinformation/modelexploration_documentation.html
inst/appinformation/vectortransmission_documentation.Rmd
inst/appinformation/stochasticseir_documentation.html
inst/appinformation/evolution_documentation.Rmd
inst/appinformation/idcontrolmultigroup_tasktable.tsv
inst/appinformation/directtransmission_tasktable.tsv
inst/appinformation/fitnoro_tasktable.tsv
inst/appinformation/idcontrolmultioutbreak_documentation.Rmd inst/appinformation/directtransmission_documentation.Rmd inst/appinformation/stochasticsir_documentation.Rmd inst/DSAIDE/app.R
inst/DSAIDE/google-analytics.html
inst/DSAIDE/packagestyle.css
inst/DSAIDE/rsconnect/shinyapps.io/handelgroup/dsaide.dcf
inst/DSAIDE/rsconnect/shinyapps.io/epibiouga/dsaide.dcf
inst/simulatorfunctions/simulate_SIR_modelexploration.R inst/simulatorfunctions/simulate_flu_fit.R inst/simulatorfunctions/simulate_multipathogen_ode.R inst/simulatorfunctions/simulate_noro_fit.R inst/simulatorfunctions/simulate_SIR_model_ode.R
inst/simulatorfunctions/simulatorfunctions.zip
inst/simulatorfunctions/simulate_idcontrolmultioutbreak_ode.R inst/simulatorfunctions/simulate_Drug_Resistance_Evolution_stochastic.R inst/simulatorfunctions/simulate_idvaccine_ode.R inst/simulatorfunctions/simulate_SIR_usanalysis.R inst/simulatorfunctions/simulate_idcontrolmultigroup_ode.R inst/simulatorfunctions/simulate_SIR_model_discrete.R inst/simulatorfunctions/simulate_Complex_ID_Control_ode.R inst/simulatorfunctions/simulate_directtransmission_ode.R inst/simulatorfunctions/simulate_SIRSd_model_ode.R inst/simulatorfunctions/simulate_Vector_transmission_model_ode.R inst/simulatorfunctions/simulate_Characteristics_of_ID_ode.R inst/simulatorfunctions/simulate_Host_Heterogeneity_Model_ode.R inst/simulatorfunctions/simulate_Environmental_Transmission_model_ode.R inst/simulatorfunctions/simulate_SIRSd_model_stochastic.R inst/simulatorfunctions/simulate_SEIRSd_model_stochastic.R inst/simulatorfunctions/simulate_idsurveillance_ode.R inst/simulatorfunctions/simulate_idpatterns_ode.R
build/vignette.rds
tests/testthat.R tests/testthat/test-generate_text.R tests/testthat/test-modelexploration.R tests/testthat/test-generate_shinyinput.R tests/testthat/test-all_simulators.R tests/testthat/test-run_model.R tests/testthat/test-generate_usplot.R tests/testthat/test-generate_documentation.R tests/testthat/Rplots.pdf tests/testthat/test-generate_plotly.R
tests/testthat/SIR_model.Rds
tests/testthat/test-generate_usplot2.R tests/testthat/test-fit-apps.R tests/testthat/test-generate_ggplot.R
vignettes/appexample.png
vignettes/whattodoexample.png
vignettes/vignetterefs.bib
vignettes/mysimulator.R
vignettes/modelexample.png
vignettes/DSAIDE.Rmd
vignettes/mainmenu.png
data/norodata.rda
data/flu1918data.rda
man/generate_text.Rd man/simulate_idcontrolmultigroup_ode.Rd man/simulate_SIRSd_model_ode.Rd man/simulate_directtransmission_ode.Rd man/simulate_SIRSd_model_stochastic.Rd man/simulate_idsurveillance_ode.Rd man/norodata.Rd man/simulate_idcontrolmultioutbreak_ode.Rd man/simulate_Vector_transmission_model_ode.Rd man/generate_shinyinput.Rd man/simulate_SIR_model_ode.Rd man/simulate_SIR_usanalysis.Rd man/simulate_flu_fit.Rd man/DSAIDE-package.Rd man/simulate_multipathogen_ode.Rd man/simulate_SIR_modelexploration.Rd man/simulate_idpatterns_ode.Rd man/simulate_idvaccine_ode.Rd man/run_model.Rd man/simulate_SEIRSd_model_stochastic.Rd man/generate_plotly.Rd man/generate_ggplot.Rd man/simulate_Environmental_Transmission_model_ode.Rd man/simulate_Characteristics_of_ID_ode.Rd man/generate_fctcall.Rd man/dsaidemenu.Rd man/simulate_noro_fit.Rd man/flu1918data.Rd man/generate_documentation.Rd man/simulate_SIR_model_discrete.Rd man/simulate_Complex_ID_Control_ode.Rd man/simulate_Drug_Resistance_Evolution_stochastic.Rd man/simulate_Host_Heterogeneity_Model_ode.Rd
man/figures/logo.png
DSAIDE documentation built on Aug. 24, 2023, 1:07 a.m.