Files in DSAIDE
Dynamical Systems Approach to Infectious Disease Epidemiology (Ecology/Evolution)

MD5
NEWS.md
DESCRIPTION
NAMESPACE
inst/CITATION
inst/doc/DSAIDE.html
inst/doc/DSAIDE.R inst/doc/DSAIDE.Rmd inst/docsfordevelopers/documentation.md
inst/DSAIDE/packagestyle.css
inst/DSAIDE/app.R
inst/DSAIDE/rsconnect/shinyapps.io/handelgroup/dsaide.dcf
inst/DSAIDE/rsconnect/shinyapps.io/epibiouga/dsaide.dcf
inst/simulatorfunctions/simulatorfunctions.zip
inst/simulatorfunctions/simulate_parasites_ode.R inst/simulatorfunctions/simulate_sirdemographic_ode.R inst/simulatorfunctions/simulate_idpatterns_ode.R inst/simulatorfunctions/simulate_sir_discrete.R inst/simulatorfunctions/simulate_directtransmission_ode.R inst/simulatorfunctions/simulate_fit_noro.R inst/simulatorfunctions/simulate_vectortransmission_ode.R inst/simulatorfunctions/simulate_modelexploration_sir.R inst/simulatorfunctions/simulate_seir_stochastic.R inst/simulatorfunctions/simulate_multipathogen_ode.R inst/simulatorfunctions/simulate_fit_flu.r inst/simulatorfunctions/simulate_idcharacteristics_ode.R inst/simulatorfunctions/simulate_evolution_stochastic.R inst/simulatorfunctions/simulate_reproductivenumber2_ode.R inst/simulatorfunctions/simulate_idcontrolmultioutbreak_ode.R inst/simulatorfunctions/simulate_maternalimmunity_ode.R inst/simulatorfunctions/simulate_sirdemographic_stochastic.R inst/simulatorfunctions/simulate_sir_ode.R inst/simulatorfunctions/simulate_idcontrol_ode.R inst/simulatorfunctions/simulate_reproductivenumber1_ode.R inst/simulatorfunctions/simulate_heterogeneity_ode.R inst/simulatorfunctions/simulate_environmentaltransmission_ode.R inst/simulatorfunctions/simulate_usanalysis_sir.R inst/simulatorfunctions/simulate_idsurveillance_ode.R inst/appinformation/modelexploration_documentation.Rmd inst/appinformation/environmentaltransmission_settings.R inst/appinformation/fitflu_documentation.Rmd inst/appinformation/idpatterns_settings.R
inst/appinformation/reproductivenumber1_documentation.html
inst/appinformation/parasitemodel_documentation.html
inst/appinformation/idcontrolcomplex_documentation.Rmd inst/appinformation/idcontrolmultioutbreak_settings.R inst/appinformation/basicsir_settings.R
inst/appinformation/directtransmission_documentation.html
inst/appinformation/stochasticsir_documentation.Rmd
inst/appinformation/reproductivenumber2_documentation.html
inst/appinformation/stochasticseir_settings.R
inst/appinformation/idcontrolvaccine_documentation.html
inst/appinformation/multipathogen_documentation.html
inst/appinformation/parasitemodel_settings.R
inst/appinformation/maternalimmunity_documentation.html
inst/appinformation/vectortransmission_documentation.html
inst/appinformation/modelexploration_settings.R inst/appinformation/stochasticsir_settings.R
inst/appinformation/idsurveillance_documentation.html
inst/appinformation/stochasticseir_documentation.html
inst/appinformation/parasitemodel_documentation.Rmd inst/appinformation/directtransmission_settings.R
inst/appinformation/usanalysis_documentation.html
inst/appinformation/idsurveillance_settings.R inst/appinformation/directtransmission_documentation.Rmd inst/appinformation/vectortransmission_settings.R inst/appinformation/environmentaltransmission_documentation.Rmd
inst/appinformation/references.bib
inst/appinformation/environmentaltransmission_documentation.html
inst/appinformation/idpatterns_documentation.Rmd inst/appinformation/fitflu_settings.R inst/appinformation/basicsir_documentation.Rmd inst/appinformation/reproductivenumber1_documentation.Rmd inst/appinformation/reproductivenumber2_documentation.Rmd inst/appinformation/stochasticseir_documentation.Rmd inst/appinformation/reproductivenumber2_settings.R
inst/appinformation/idcontrolmultioutbreak_documentation.html
inst/appinformation/idcharacteristics_settings.R
inst/appinformation/modelexploration_documentation.html
inst/appinformation/fitnoro_documentation.html
inst/appinformation/idcontrolcomplex_documentation.html
inst/appinformation/fitnoro_settings.R inst/appinformation/hostheterogeneity_documentation.Rmd
inst/appinformation/fitflu_documentation.html
inst/appinformation/hostheterogeneity_documentation.html
inst/appinformation/maternalimmunity_settings.R inst/appinformation/hostheterogeneity_settings.R inst/appinformation/usanalysis_settings.R inst/appinformation/fitnoro_documentation.Rmd inst/appinformation/evolutionarydynamics_documentation.Rmd inst/appinformation/usanalysis_documentation.Rmd inst/appinformation/idcontrolvaccine_settings.R inst/appinformation/evolutionarydynamics_settings.R
inst/appinformation/basicsir_documentation.html
inst/appinformation/idcharacteristics_documentation.Rmd inst/appinformation/idcontrolvaccine_documentation.Rmd inst/appinformation/vectortransmission_documentation.Rmd inst/appinformation/idsurveillance_documentation.Rmd
inst/appinformation/idpatterns_documentation.html
inst/appinformation/multipathogen_settings.R inst/appinformation/maternalimmunity_documentation.Rmd
inst/appinformation/stochasticsir_documentation.html
inst/appinformation/evolutionarydynamics_documentation.html
inst/appinformation/idcontrolcomplex_settings.R
inst/appinformation/idcharacteristics_documentation.html
inst/appinformation/reproductivenumber1_settings.R inst/appinformation/multipathogen_documentation.Rmd inst/appinformation/idcontrolmultioutbreak_documentation.Rmd
vignettes/modelexample.png
vignettes/whattodoexample.png
vignettes/appexample.png
vignettes/mysimulator.R
vignettes/mainmenu.png
vignettes/vignetterefs.bib
vignettes/DSAIDE.Rmd R/simulate_parasites_ode.R R/simulate_sirdemographic_ode.R R/simulate_idpatterns_ode.R R/simulate_sir_discrete.R R/simulate_directtransmission_ode.R R/data.R R/simulate_fit_noro.R R/simulate_vectortransmission_ode.R R/simulate_modelexploration_sir.R R/simulate_seir_stochastic.R R/generate_fctcall.R R/dsaidemenu.R R/simulate_multipathogen_ode.R R/generate_documentation.R R/simulate_fit_flu.r R/simulate_idcharacteristics_ode.R R/simulate_evolution_stochastic.R R/simulate_reproductivenumber2_ode.R R/simulate_idcontrolmultioutbreak_ode.R R/simulate_maternalimmunity_ode.R R/generate_text.R R/simulate_sirdemographic_stochastic.R R/generate_ggplot.R R/simulate_sir_ode.R R/simulate_idcontrol_ode.R R/simulate_reproductivenumber1_ode.R R/simulate_heterogeneity_ode.R R/simulate_environmentaltransmission_ode.R R/simulate_usanalysis_sir.R R/run_model.R R/DSAIDE.R R/simulate_idsurveillance_ode.R R/generate_plotly.R R/generate_shinyinput.R man/simulate_directtransmission_ode.Rd man/DSAIDE.Rd man/simulate_sirdemographic_ode.Rd man/simulate_evolution_stochastic.Rd man/generate_text.Rd man/simulate_maternalimmunity_ode.Rd man/generate_shinyinput.Rd man/simulate_reproductivenumber2_ode.Rd man/generate_fctcall.Rd man/simulate_fit_flu.Rd man/simulate_environmentaltransmission_ode.Rd man/simulate_multipathogen_ode.Rd man/flu1918data.Rd man/simulate_parasites_ode.Rd man/dsaidemenu.Rd man/simulate_usanalysis_sir.Rd man/simulate_sir_discrete.Rd man/generate_ggplot.Rd man/simulate_sir_ode.Rd man/run_model.Rd man/simulate_idcontrol_ode.Rd man/simulate_fit_noro.Rd man/simulate_idcharacteristics_ode.Rd man/simulate_idcontrolmultioutbreak_ode.Rd man/simulate_idsurveillance_ode.Rd man/simulate_vectortransmission_ode.Rd man/generate_documentation.Rd man/generate_plotly.Rd man/simulate_idpatterns_ode.Rd man/simulate_seir_stochastic.Rd man/norodata.Rd man/simulate_heterogeneity_ode.Rd man/simulate_sirdemographic_stochastic.Rd man/simulate_modelexploration_sir.Rd man/simulate_reproductivenumber1_ode.Rd
build/vignette.rds
tests/testthat.R tests/testthat/test-generate_shinyinput.R tests/testthat/test-generate_usplot.R tests/testthat/test-generate_plotly.R tests/testthat/Rplots.pdf tests/testthat/test-generate_documentation.R tests/testthat/test-fit-apps.R tests/testthat/test-modelexploration.R tests/testthat/test-generate_text.R tests/testthat/test-run_model.R tests/testthat/test-generate_ggplot.R
data/flu1918data.rda
data/norodata.rda
DSAIDE documentation built on Jan. 9, 2020, 1:06 a.m.