Files in DSAIRM
Dynamical Systems Approach to Immune Response Modeling

NEWS.md
MD5
NAMESPACE
DESCRIPTION
build/vignette.rds
data/hayden96flu.rda
R/generate_documentation.R R/simulate_virusandir_ode.R R/dsairmmenu.R R/simulate_basicvirus_fit.R R/generate_text.R R/simulate_basicbacteria_ode.R R/generate_shinyinput.R R/generate_ggplot.R R/simulate_confint_fit.R R/generate_fctcall.R R/simulate_fludrug_fit.R R/simulate_modelcomparison_fit.R R/simulate_modelvariants_ode.R R/simulate_usanalysis.R R/DSAIRM.R R/generate_equations.R R/simulate_drugresistance_stochastic.R R/simulate_basicvirus_modelexploration.R R/simulate_basicvirus_ode.R R/run_model.R R/simulate_basicvirus_stochastic.R R/simulate_pkpdmodel_ode.R R/generate_plotly.R R/simulate_basicbacteria_modelexploration.R R/simulate_basicbacteria_discrete.R R/data.R R/simulate_virusandtx_ode.R
vignettes/appexample.png
vignettes/modelexample.png
vignettes/vignetterefs.bib
vignettes/mainmenu.png
vignettes/mysimulator.R vignettes/DSAIRM.Rmd
vignettes/whattodoexample.png
man/DSAIRM.Rd man/simulate_basicvirus_modelexploration.Rd man/simulate_basicbacteria_ode.Rd man/simulate_basicvirus_fit.Rd man/simulate_virusandir_ode.Rd man/simulate_modelvariants_ode.Rd man/run_model.Rd man/simulate_modelcomparison_fit.Rd man/simulate_fludrug_fit.Rd man/hayden96flu.Rd man/simulate_drugresistance_stochastic.Rd man/generate_shinyinput.Rd man/simulate_confint_fit.Rd man/simulate_virusandtx_ode.Rd man/generate_ggplot.Rd man/generate_plotly.Rd man/generate_equations.Rd man/generate_documentation.Rd man/simulate_basicbacteria_discrete.Rd man/dsairmmenu.Rd man/simulate_usanalysis.Rd man/simulate_basicvirus_stochastic.Rd man/simulate_basicvirus_ode.Rd man/simulate_basicbacteria_modelexploration.Rd man/generate_fctcall.Rd man/simulate_pkpdmodel_ode.Rd man/generate_text.Rd tests/testthat.R tests/testthat/test-stochastic-virus-app.R tests/testthat/test-modelexploration.R tests/testthat/test-generate_shinyinput.R tests/testthat/test-run_model.R tests/testthat/test-generate_usplot.R tests/testthat/test-fit-apps.R tests/testthat/test-generate_text.R tests/testthat/test-generate_documentation.R tests/testthat/test-generate_plotly.R tests/testthat/Rplots.pdf tests/testthat/test-generate_ggplot.R
inst/CITATION
inst/simulatorfunctions/simulate_virusandir_ode.R inst/simulatorfunctions/simulate_basicvirus_fit.R inst/simulatorfunctions/simulate_basicbacteria_ode.R inst/simulatorfunctions/simulate_confint_fit.R inst/simulatorfunctions/simulate_fludrug_fit.R inst/simulatorfunctions/simulate_modelcomparison_fit.R inst/simulatorfunctions/simulate_modelvariants_ode.R inst/simulatorfunctions/simulate_usanalysis.R inst/simulatorfunctions/simulate_drugresistance_stochastic.R inst/simulatorfunctions/simulate_basicvirus_modelexploration.R
inst/simulatorfunctions/simulatorfunctions.zip
inst/simulatorfunctions/simulate_basicvirus_ode.R inst/simulatorfunctions/simulate_basicvirus_stochastic.R inst/simulatorfunctions/simulate_pkpdmodel_ode.R inst/simulatorfunctions/simulate_basicbacteria_modelexploration.R inst/simulatorfunctions/simulate_basicbacteria_discrete.R inst/simulatorfunctions/simulate_virusandtx_ode.R inst/doc/DSAIRM.R
inst/doc/DSAIRM.html
inst/doc/DSAIRM.Rmd
inst/appinformation/basicvirus_documentation.html
inst/appinformation/bacteriaexploration_documentation.Rmd inst/appinformation/fitmodelcomparison_documentation.Rmd
inst/appinformation/usanalysis_documentation.html
inst/appinformation/basicbacteria_documentation.html
inst/appinformation/fitfludrug_documentation.Rmd
inst/appinformation/fitbasicmodel_documentation.html
inst/appinformation/modelvariants_documentation.Rmd
inst/appinformation/apptable.tsv
inst/appinformation/usanalysis_documentation.Rmd inst/appinformation/drugresistance_documentation.Rmd
inst/appinformation/pkpdmodel_documentation.html
inst/appinformation/fitbasicmodel_documentation.Rmd
inst/appinformation/bacteriaexploration_documentation.html
inst/appinformation/references.bib
inst/appinformation/virusexploration_documentation.Rmd
inst/appinformation/drugresistance_documentation.html
inst/appinformation/virusandir_documentation.Rmd
inst/appinformation/modelvariants_documentation.html
inst/appinformation/virusandir_documentation.html
inst/appinformation/fitmodelcomparison_documentation.html
inst/appinformation/pkpdmodel_documentation.Rmd
inst/appinformation/fitfludrug_documentation.html
inst/appinformation/fitconfint_documentation.html
inst/appinformation/virusandtx_documentation.html
inst/appinformation/fitconfint_documentation.Rmd inst/appinformation/basicbacteria_documentation.Rmd
inst/appinformation/basicvirusstochastic_documentation.html
inst/appinformation/virusexploration_documentation.html
inst/appinformation/basicvirusstochastic_documentation.Rmd inst/appinformation/basicvirus_documentation.Rmd inst/appinformation/virusandtx_documentation.Rmd
inst/mbmodels/SIRSd_model.rds
inst/mbmodels/SEIRSd_model.rds
inst/mbmodels/Vector_transmission_model.rds
inst/mbmodels/SIR_model.rds
inst/mbmodels/Environmental_Transmission_model.rds
inst/helperfunctions/make_tasktable.R inst/helperfunctions/fill_tasktable.R inst/helperfunctions/save_tasktable.R inst/helperfunctions/write_tasktext.R inst/helperfunctions/get_settings.R inst/docsfordevelopers/processing-script.R inst/docsfordevelopers/documentation.md
inst/DSAIRM/google-analytics.html
inst/DSAIRM/app.R
inst/DSAIRM/packagestyle.css
inst/DSAIRM/rsconnect/shinyapps.io/epibiouga/dsairm.dcf
DSAIRM documentation built on July 14, 2020, 5:08 p.m.