Files in DSAIRM

Dynamical Systems Approach to Immune Response Modeling

MD5

NEWS.md

NAMESPACE

DESCRIPTION

R/generate_text.R R/generate_plotly.R R/dsairmmenu.R R/simulate_extendedbacteria_ode.R R/simulate_basicvirus_fit.R R/simulate_bacteria_fit.R R/simulate_usanalysis.R R/simulate_basicvirus_stochastic.R R/simulate_pkpdmodel_ode.R R/generate_modelsettings.R R/simulate_chronicvirusir_ode.R R/simulate_modelcomparison_fit.R R/data.R R/generate_ggplot.R R/simulate_basicvirus_ode.R R/simulate_confint_fit.R R/simulate_drugresistance_stochastic.R R/generate_fctcall.R R/simulate_acutevirusir_ode.R R/simulate_basicvirus_modelexploration.R R/simulate_fludrug_fit.R R/simulate_virusandir_ode.R R/simulate_basicbacteria_ode.R R/generate_documentation.R R/check_simresults.R R/simulate_modelvariants_ode.R R/simulate_basicbacteria_modelexploration.R R/generate_shinyinput.R R/simulate_basicbacteria_discrete.R R/run_model.R R/simulate_virusandtx_ode.R R/DSAIRM-package.R

inst/CITATION

inst/doc/DSAIRM.R inst/doc/DSAIRM.Rmd

inst/doc/DSAIRM.html

inst/mbmodels/Basic_Bacteria_model.Rds

inst/mbmodels/Basic_Virus_model.Rds

inst/appinformation/apptable.tsv

inst/appinformation/basicvirusstochastic_documentation.html

inst/appinformation/usanalysis_documentation.html

inst/appinformation/extendedbacteria_documentation.Rmd

inst/appinformation/basicbacteriaexploration_documentation.html

inst/appinformation/extendedbacteria_documentation.html

inst/appinformation/pkpdmodel_documentation.html

inst/appinformation/basicbacteria_tasktable.tsv

inst/appinformation/startup_script.R

inst/appinformation/basicvirusstochastic_tasktable.tsv

inst/appinformation/basicbacteria_documentation.Rmd inst/appinformation/fitbasicmodel_documentation.Rmd

inst/appinformation/virusandtx_tasktable.tsv

inst/appinformation/basicvirus_documentation.Rmd

inst/appinformation/fitconfint_tasktable.tsv

inst/appinformation/usanalysis_documentation.Rmd

inst/appinformation/fitbacteria_documentation.html

inst/appinformation/modelvariants_tasktable.tsv

inst/appinformation/drugresistance_documentation.Rmd

inst/appinformation/fitfludrug_tasktable.tsv

inst/appinformation/fitmodelcomparison_tasktable.tsv

inst/appinformation/pkpdmodel_documentation.Rmd inst/appinformation/acutevirusir_documentation.Rmd

inst/appinformation/acutevirusir_documentation.html

inst/appinformation/fitconfint_documentation.Rmd

inst/appinformation/virusandir_documentation.html

inst/appinformation/basicvirus_documentation.html

inst/appinformation/virusandtx_documentation.html

inst/appinformation/chronicvirusir_documentation.Rmd

inst/appinformation/basicvirusexploration_tasktable.tsv

inst/appinformation/basicbacteria_documentation.html

inst/appinformation/virusandir_tasktable.tsv

inst/appinformation/fitbacteria_tasktable.tsv

inst/appinformation/basicvirusexploration_documentation.html

inst/appinformation/extendedbacteria_tasktable.tsv

inst/appinformation/basicvirusexploration_documentation.Rmd inst/appinformation/fitmodelcomparison_documentation.Rmd inst/appinformation/basicvirusstochastic_documentation.Rmd

inst/appinformation/fitbasicmodel_documentation.html

inst/appinformation/virusandtx_documentation.Rmd

inst/appinformation/pkpdmodel_tasktable.tsv

inst/appinformation/chronicvirusir_tasktable.tsv

inst/appinformation/basicbacteriaexploration_documentation.Rmd

inst/appinformation/modelvariants_documentation.html

inst/appinformation/fitfludrug_documentation.html

inst/appinformation/basicbacteriaexploration_tasktable.tsv

inst/appinformation/fitconfint_documentation.html

inst/appinformation/usanalysis_tasktable.tsv

inst/appinformation/basicvirus_tasktable.tsv

inst/appinformation/chronicvirusir_documentation.html

inst/appinformation/fitbacteria_documentation.Rmd

inst/appinformation/fitbasicmodel_tasktable.tsv

inst/appinformation/dsairm_references.bib

inst/appinformation/drugresistance_tasktable.tsv

inst/appinformation/modelvariants_documentation.Rmd inst/appinformation/fitfludrug_documentation.Rmd

inst/appinformation/fitmodelcomparison_documentation.html

inst/appinformation/virusandir_documentation.Rmd

inst/appinformation/drugresistance_documentation.html

inst/appinformation/acutevirusir_tasktable.tsv

inst/simulatorfunctions/simulate_extendedbacteria_ode.R inst/simulatorfunctions/simulate_basicvirus_fit.R inst/simulatorfunctions/simulate_bacteria_fit.R inst/simulatorfunctions/simulate_usanalysis.R inst/simulatorfunctions/simulate_basicvirus_stochastic.R inst/simulatorfunctions/simulate_pkpdmodel_ode.R inst/simulatorfunctions/simulate_chronicvirusir_ode.R

inst/simulatorfunctions/simulatorfunctions.zip

inst/simulatorfunctions/simulate_modelcomparison_fit.R inst/simulatorfunctions/simulate_basicvirus_ode.R inst/simulatorfunctions/simulate_confint_fit.R inst/simulatorfunctions/simulate_drugresistance_stochastic.R inst/simulatorfunctions/simulate_acutevirusir_ode.R inst/simulatorfunctions/simulate_basicvirus_modelexploration.R inst/simulatorfunctions/simulate_fludrug_fit.R inst/simulatorfunctions/simulate_virusandir_ode.R inst/simulatorfunctions/simulate_basicbacteria_ode.R inst/simulatorfunctions/simulate_modelvariants_ode.R inst/simulatorfunctions/simulate_basicbacteria_modelexploration.R inst/simulatorfunctions/simulate_basicbacteria_discrete.R inst/simulatorfunctions/simulate_virusandtx_ode.R inst/DSAIRM/app.R

inst/DSAIRM/google-analytics.html

inst/DSAIRM/packagestyle.css

inst/DSAIRM/rsconnect/shinyapps.io/epibiouga/dsairm.dcf

build/vignette.rds

tests/testthat.R tests/testthat/test-generate_text.R tests/testthat/test-generate_shinyinput.R tests/testthat/test-basicbacteria-modelexploration.R tests/testthat/test-run_model.R tests/testthat/test-generate_usplot.R tests/testthat/test-generate_documentation.R tests/testthat/Rplots.pdf tests/testthat/test-generate_plotly.R tests/testthat/test-stochastic-virus-app.R tests/testthat/test-fit-apps.R tests/testthat/test-basicvirus-modelexploration.R tests/testthat/test-individual-apps.R tests/testthat/test-generate_ggplot.R

vignettes/appexample.png

vignettes/whattodoexample.png

vignettes/vignetterefs.bib

vignettes/DSAIRM.Rmd vignettes/mysimulator.R

vignettes/modelexample.png

vignettes/mainmenu.png

data/hayden96flu.rda

data/schirm20strep.rda

man/generate_text.Rd man/simulate_virusandtx_ode.Rd man/simulate_basicbacteria_modelexploration.Rd man/simulate_acutevirusir_ode.Rd man/simulate_basicvirus_modelexploration.Rd man/simulate_pkpdmodel_ode.Rd man/simulate_extendedbacteria_ode.Rd man/simulate_modelvariants_ode.Rd man/simulate_usanalysis.Rd man/generate_shinyinput.Rd man/simulate_basicvirus_stochastic.Rd man/simulate_basicvirus_fit.Rd man/dsairmmenu.Rd man/check_simresults.Rd man/simulate_basicbacteria_discrete.Rd man/simulate_bacteria_fit.Rd man/simulate_drugresistance_stochastic.Rd man/simulate_fludrug_fit.Rd man/simulate_modelcomparison_fit.Rd man/simulate_basicvirus_ode.Rd man/run_model.Rd man/simulate_virusandir_ode.Rd man/generate_plotly.Rd man/generate_ggplot.Rd man/simulate_basicbacteria_ode.Rd man/simulate_chronicvirusir_ode.Rd man/generate_fctcall.Rd man/simulate_confint_fit.Rd man/generate_modelsettings.Rd man/generate_documentation.Rd man/schirm20strep.Rd man/DSAIRM-package.Rd man/hayden96flu.Rd

man/figures/logo.png

DSAIRM documentation built on Aug. 24, 2023, 1:07 a.m.