tf2target: The dataset of human Transcription Factors regulate potential...

Description Usage Format Details Author(s) Examples

Description

There are 19,9950 TF-to-target interaction pairs downloaded from UCSC (http://genome.ucsc.edu/).

Usage

1

Format

A data frame with 19,9950 observations 2 variables.

Details

We downloaded tfbsConsSites and tfbsConsFactors files from UCSC (http://genome.ucsc.edu). tfbsConsSites gives the coordinate information of all TFs acted on, tfbsConsFactors gives TFs identifier information. We can predict all the TFs to potential targets relationship based on refGene file which also came from UCSC and contained genes' position information of hg18. There are 199 TFs and 19,9950 TF-to-target interactions.

Author(s)

Jing Yang, Hui Yu

Examples

1
2
data(tf2target)
tf2target[1:3,] # TFs (column 1) act on potential target genes (column 2)

DSviaDRM documentation built on May 2, 2019, 5:54 a.m.