solveOLSInternal: solveOLSInternal

In DWLS: Gene Expression Deconvolution Using Dampened Weighted Least Squares

solveOLSInternal

Description

This function solves or the unknown parameters using ordinary least squares (OLS) without printing the output. It returns the cell numbers, not the proportions (see solveOLS).

Usage

solveOLSInternal(S, B)

Arguments

S	List output from trimData$sig (S)
B	List output from trimData$bulk (B)

Value

Cell numbers

Examples

#Sig
#url <- "https://github.com/sistia01/DWLS/raw/main/inst/extdata/Sig.RData"
#dest <- "data/Sig.RData"
#download.file(url, dest)
#load("data/Sig.RData")
load(system.file("extdata", "Sig.RData", package = "DWLS"))

#dataBulk
#url <- "https://github.com/sistia01/DWLS/raw/main/inst/extdata/dataBulk.RData"
#dest <- "data/dataBulk.RData"
#download.file(url, dest)
#load("data/dataBulk.RData")
load(system.file("extdata", "dataBulk.RData", package = "DWLS"))

trimmed <- trimData(Sig, dataBulk)
S <- trimmed$sig
B <- trimmed$bulk
solveOLSInternal(S, B)

DWLS documentation built on May 24, 2022, 5:07 p.m.