trimData: trimData

In DWLS: Gene Expression Deconvolution Using Dampened Weighted Least Squares

trimData

Description

This function trims bulk and single-cell data to contain the same genes. The result is a list of the intersecting genes within the two datasets.

Usage

trimData(Signature_Matrix, bulkdata)

Arguments

Signature_Matrix	A single-cell signature matrix
bulkdata	A bulk dataset

Value

A list of trimmed bulk and single-cell data.

Examples

 
#Sig
#url <- "https://github.com/sistia01/DWLS/raw/main/inst/extdata/Sig.RData"
#dest <- "data/Sig.RData"
#download.file(url, dest)
#load("data/Sig.RData")
load(system.file("extdata", "Sig.RData", package = "DWLS"))

#dataBulk
#url <- "https://github.com/sistia01/DWLS/raw/main/inst/extdata/dataBulk.RData"
#dest <- "data/dataBulk.RData"
#download.file(url, dest)
#load("data/dataBulk.RData")
load(system.file("extdata", "dataBulk.RData", package = "DWLS"))

trimData(Signature_Matrix = Sig, bulkdata = dataBulk)

DWLS documentation built on May 24, 2022, 5:07 p.m.