Demerelate: Functions to Calculate Relatedness on Diploid Genetic Data

Functions to calculate pairwise relatedness on diploid genetic datasets. Different estimators for relatedness can be combined with information on geographical distances. Information on heterozygosity, allele- and genotype diversity as well as genetic F-statistics are provided for each population.

Author
Philipp Kraemer [aut, cre], Gabriele Gerlach [aut]
Date of publication
2016-08-31 20:46:05
Maintainer
Philipp Kraemer <Philipp.Kraemer@uni-oldenburg.de>
License
GPL (>= 2)
Version
0.9-1
URLs

View on CRAN

Man pages

allele.sharing
Calculates allele sharing rates or similarity estimators for...
Demerelate
Demerelate - Algorithms to estimate pairwise relatedness...
Demerelate-package
Demerelate - Algorithms to estimate pairwise relatedness...
Emp.calc
Function to calculate pairwise relatedness within populations...
Example.Data
Example dataset for package Demerelate to calculate inter...
Fis
Calculates allele and genotype frequencies
Fis.calc
Calculation of Fis empirical and bootstrapped values
F.stat
Head function to calculate F statistics.
geo.dist
Calculates geographic distances.
glm.prep
Preparation for multinomial logistic regression.
input.txt
Reads different types of tables and returns an object.
Lin.reg.distance
Linear regression of empirical genetic relatedness with...
Loci.test
Analysis on differences in mean relatedness based on number...
offspring
Mendelian offspring generator
random.pairs
Random pairs generator
relate.calc
Coordinates internally reference and empirical datasets and...
Similarity.Index
Pairwise genetic similarity calculated based on different...
stat.pops
Calculation of Fis empirical and bootstrapped values
weir
Calculation of F_{is} based on Weir and Cockerham 1984

Files in this package

Demerelate
Demerelate/NAMESPACE
Demerelate/data
Demerelate/data/demerelpop.rda
Demerelate/data/demerelref.rda
Demerelate/data/demereldist.rda
Demerelate/R
Demerelate/R/Sxy.R
Demerelate/R/morans.fin.R
Demerelate/R/Lin.reg.distance.R
Demerelate/R/geo.dist.R
Demerelate/R/Fis.R
Demerelate/R/wang.R
Demerelate/R/lxy.w.R
Demerelate/R/ritland.R
Demerelate/R/wang.fin.w.R
Demerelate/R/lxy.R
Demerelate/R/morans.fin.w.R
Demerelate/R/rxy.R
Demerelate/R/Fis.calc.R
Demerelate/R/wang.w.R
Demerelate/R/morans.w.R
Demerelate/R/wang.compose.R
Demerelate/R/random.pairs.R
Demerelate/R/relate.calc.R
Demerelate/R/offspring.R
Demerelate/R/Bxy.R
Demerelate/R/Li.R
Demerelate/R/morans.R
Demerelate/R/ritland.w.R
Demerelate/R/wang.fin.R
Demerelate/R/allele.sharing.R
Demerelate/R/Demerelate.R
Demerelate/R/loiselle.R
Demerelate/R/input.R
Demerelate/R/loiselle.w.R
Demerelate/R/stat.pops.R
Demerelate/R/Loci.test.R
Demerelate/R/Emp.calc.R
Demerelate/R/glm.prep.R
Demerelate/R/Mxy.R
Demerelate/R/F.stat.R
Demerelate/R/weir.R
Demerelate/MD5
Demerelate/DESCRIPTION
Demerelate/man
Demerelate/man/Example.Data.Rd
Demerelate/man/Lin.reg.distance.Rd
Demerelate/man/weir.Rd
Demerelate/man/glm.prep.Rd
Demerelate/man/offspring.Rd
Demerelate/man/F.stat.Rd
Demerelate/man/relate.calc.Rd
Demerelate/man/random.pairs.Rd
Demerelate/man/Fis.Rd
Demerelate/man/input.txt.Rd
Demerelate/man/Emp.calc.Rd
Demerelate/man/geo.dist.Rd
Demerelate/man/allele.sharing.Rd
Demerelate/man/Loci.test.Rd
Demerelate/man/Demerelate.Rd
Demerelate/man/Demerelate-package.Rd
Demerelate/man/Similarity.Index.Rd
Demerelate/man/Fis.calc.Rd
Demerelate/man/stat.pops.Rd