Demerelate: Functions to Calculate Relatedness on Diploid Genetic Data
Version 0.9-3

Functions to calculate pairwise relatedness on diploid genetic datasets. Different estimators for relatedness can be combined with information on geographical distances. Information on heterozygosity, allele- and genotype diversity as well as genetic F-statistics are provided for each population.

Browse man pages Browse package API and functions Browse package files

AuthorPhilipp Kraemer [aut, cre], Gabriele Gerlach [aut]
Date of publication2017-03-03 18:01:40
MaintainerPhilipp Kraemer <Philipp.Kraemer@uni-oldenburg.de>
LicenseGPL (>= 2)
Version0.9-3
URL https://www.r-project.org
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("Demerelate")

Man pages

allele.sharing: Calculates allele sharing rates or similarity estimators for...
Demerelate: Demerelate - Algorithms to estimate pairwise relatedness...
Demerelate-package: Demerelate - Algorithms to estimate pairwise relatedness...
Emp.calc: Function to calculate pairwise relatedness within populations...
Example.Data: Example dataset for package Demerelate to calculate inter...
Fis: Calculates allele and genotype frequencies
Fis.calc: Calculation of Fis empirical and bootstrapped values
F.stat: Head function to calculate F statistics.
geo.dist: Calculates geographic distances.
glm.prep: Preparation for multinomial logistic regression.
input.txt: Reads different types of tables and returns an object.
Lin.reg.distance: Linear regression of empirical genetic relatedness with...
Loci.test: Analysis on differences in mean relatedness based on number...
offspring: Mendelian offspring generator
relate.calc: Coordinates internally reference and empirical datasets and...
Similarity.Index: Pairwise genetic similarity calculated based on different...
stat.pops: Calculation of Fis empirical and bootstrapped values
weir: Calculation of F_{is} based on Weir and Cockerham 1984

Functions

Bxy Man page Source code
Demerelate Man page Source code
Demerelate-package Man page
Emp.calc Man page Source code
F.stat Man page
Fis Man page Source code
Fis.calc Man page Source code
Li Man page Source code
Lin.reg.distance Man page Source code
Loci.test Man page Source code
Mxy Man page Source code
Sxy Man page Source code
allele.sharing Man page Source code
demereldist Man page
demerelpop Man page
demerelref Man page
geo.dist Man page Source code
glm.prep Man page Source code
input.txt Man page Source code
inputformat Man page
loiselle Man page Source code
lxy Man page Source code
lxy.w Man page Source code
morans.fin Man page Source code
morans.w Man page Source code
offspring Man page Source code
relate.calc Man page Source code
ritland Man page Source code
rxy Man page Source code
stat Source code
stat.pops Man page Source code
wang Man page Source code
wang.compose Man page Source code
wang.fin Man page
wang.fin.w Man page Source code
wang.w Man page Source code
weir Man page Source code

Files

NAMESPACE
data
data/demerelpop.rda
data/demerelref.rda
data/demereldist.rda
R
R/Sxy.R
R/morans.fin.R
R/Lin.reg.distance.R
R/geo.dist.R
R/Fis.R
R/wang.R
R/lxy.w.R
R/ritland.R
R/wang.fin.w.R
R/lxy.R
R/rxy.R
R/Fis.calc.R
R/wang.w.R
R/morans.w.R
R/wang.compose.R
R/relate.calc.R
R/offspring.R
R/Bxy.R
R/Li.R
R/allele.sharing.R
R/Demerelate.R
R/loiselle.R
R/input.R
R/stat.pops.R
R/Loci.test.R
R/Emp.calc.R
R/glm.prep.R
R/Mxy.R
R/F.stat.R
R/weir.R
MD5
DESCRIPTION
man
man/Example.Data.Rd
man/Lin.reg.distance.Rd
man/weir.Rd
man/glm.prep.Rd
man/offspring.Rd
man/F.stat.Rd
man/relate.calc.Rd
man/Fis.Rd
man/input.txt.Rd
man/Emp.calc.Rd
man/geo.dist.Rd
man/allele.sharing.Rd
man/Loci.test.Rd
man/Demerelate.Rd
man/Demerelate-package.Rd
man/Similarity.Index.Rd
man/Fis.calc.Rd
man/stat.pops.Rd
Demerelate documentation built on May 20, 2017, 5:47 a.m.