Allele sharing and relatedness estimators can be calculated for one population as a mean over several loci.
Emp.calc(tab.pop.pop, value="NA", ref.pop="NA")
Object with information for one population and loci. Object needs to be formatted according to inputformat.
String defining method to calculate allele sharing or similarity estimates. Can be set as "Bxy", "Sxy", "Mxy", "Li", "lxy", "rxy", "loiselle", "wang.fin", "wang", "ritland", "morans.fin" or "morans" allele.sharing.
Reference population needs to be specified for several calculations.
The function calculates pairwise relatedness for all individuals in the dataframe. The output is a matrix of similarities by relatedness values in the population.
Object containing a dataframe of mean individual pairwise relatedness. If value="NA" all available estimators are calculated in one call of function
Philipp Kraemer, <[email protected]>
Armstrong, W. (2012) fts: R interface to tslib (a time series library in c++). by R package version
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## demerelpop needs to be an object of class data.frame formatted ## according to inputformat. For each pairwise comparison in ## in the data.frame empirical estimates of relatedness are ## calculated omitting statistics. data(demerelpop) # As example Mxy is calculated for one population of demerelpop demerelpop.sp <- split(demerelpop,demerelpop[,2]) empirical.result <- Emp.calc(demerelpop.sp[], value="Mxy", ref.pop="NA")
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