DendSer: Dendrogram seriation: ordering for visualisation
Version 1.0.1

Re-arranges a dendrogram to optimize visualisation-based cost functions

AuthorCatherine B. Hurley and Denise Earle
Date of publication2013-09-09 21:15:20
MaintainerCatherine Hurley <catherine.hurley@nuim.ie>
LicenseGPL-2
Version1.0.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("DendSer")

Popular man pages

costARc: Cost functions for DendSer
crit2cost: Cost function from seriation criterion
DendSer: Implements dendrogram seriation
dser: Implements dendrogram seriation. Interface to DendSer.
plotAsColor: Function that plots a matrix as a color image
See all...

All man pages Function index File listing

Man pages

costARc: Cost functions for DendSer
crit2cost: Cost function from seriation criterion
DendSer: Implements dendrogram seriation
dser: Implements dendrogram seriation. Interface to DendSer.
plotAsColor: Function that plots a matrix as a color image

Functions

AR_target Source code
DendSer Man page Source code
c0 Source code
costARc Man page Source code
costBAR Man page Source code
costED Man page Source code
costLPL Man page Source code
costLS Man page Source code
costPL Man page Source code
crit2cost Man page Source code
criterion_method_dist_ARc Source code
criterion_method_dist_BAR Source code
criterion_method_dist_LPL Source code
defaultOp Source code
defaultOpE Source code
defaultcostArg Source code
dser Man page Source code
dser.data.frame Man page Source code
dser.dist Man page Source code
dser.hclust Man page Source code
dser.matrix Man page Source code
leafSort Source code
plotAsColor Man page Source code
preph Source code
preph1 Source code
r0 Source code
r01 Source code
r1 Source code
seriation_method_dist_dser Source code
seriation_method_leafsort Source code
t0 Source code
t01 Source code
t1 Source code

Files

src
src/cpl.c
src/clpl.c
src/cbar.c
src/carct.c
NAMESPACE
demo
demo/sleep.R
demo/pottery.R
demo/toy.R
demo/00Index
demo/fib.R
R
R/DendSer.R
R/cost.R
R/plotAsColor.R
R/node.R
R/leafSort.R
R/dser.R
R/dser2seriate.R
MD5
DESCRIPTION
man
man/DendSer.Rd
man/dser.Rd
man/costARc.Rd
man/plotAsColor.Rd
man/crit2cost.Rd
DendSer documentation built on May 19, 2017, 4:28 p.m.

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