Man pages for DiNAMIC.Duo
Finding Recurrent DNA Copy Number Alterations and Differences
| cyclicNullR | Create a cyclic shift-based null distribution for one or two... |
| cyclicShiftColR | Perform the cyclic shift procedure on the columns of a matrix |
| dataPrep | Prepare copy number data for downstream analysis |
| findNull | Find DiNAMIC's null distribution |
| genomeChrPlot | A Function for Plotting Mean Copy Number Values and... |
| genomePlot | A Function for Plotting Mean Copy Number Values and... |
| luadSubset | DNA copy number data for lung adenocarcinoma. |
| luscSubset | DNA copy number data for lung squamous cell carcinoma. |
| pD | Prepped data for DiNAMIC.Duo. |
| peelingOne | A Function to Apply the Peeling Algorithm in a Single Copy... |
| peelingOneIterate | A Function to Apply the Peeling Algorithm in a Single Copy... |
| peelingTwo | A Function to Apply the Peeling Algorithm in a Two Copy... |
| peelingTwoIterate | A Function to Apply the Peeling Algorithm for Two Copy Number... |
| resultsProcess | Processing peeling results |
