luadSubset: DNA copy number data for lung adenocarcinoma.

luadSubsetR Documentation

DNA copy number data for lung adenocarcinoma.

Description

A subset of the DNA copy number data from the TCGA lung lung adenocarcinoma cohort.

Usage

luadSubset

Format

A numeric matrix of quantitative DNA copy number values with 3475 rows and 65 columns. Rows are indexed by genes, and columns are indexed by samples. The entries are on the log ratio scale and were produced by the GISTIC pipeline.

Details

The original data set downloaded from https://gdac.broadinstitute.org/ contained gene-level segmented DNA copy number values for 24776 genes and 516 samples that were produced by the GISTIC pipeline. Because of the size limitations on data in R packages, a random subset of genes and samples was selected. By construction, the number of genes and samples in the lung adenocarcinoma data is different than the number of genes and samples in the lung squamous cell carcinoma data.

Source

https://gdac.broadinstitute.org/


DiNAMIC.Duo documentation built on March 7, 2023, 8:38 p.m.