DivMelt: HRM Diversity Assay Analysis Tool

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This package has tools for analyzing DNA melting data to generate HRM scores, the DNA diversity measure output of the HRM Diversity Assay. For additional documentation visit http://code.google.com/p/divmelt/.

Author
David A. Swan <dswan@fhcrc.org> with contributions from Craig A Magaret <cmagaret@fhcrc.org> and Matthew M Cousins <matthew.m.cousins@gmail.com>
Date of publication
2013-01-29 07:31:17
Maintainer
David A. Swan <dswan@fhcrc.org>
License
GPL (>= 2)
Version
1.0.3
URLs

View on CRAN

Man pages

DivMelt_gui
User Interface for the Diversity Assay Analysis Tool
model
Linear regression model for acceptance of Fluorescence data
modelDivMelt
Routine to generate LASSO model for the Diversity Assay...
plotPDF
Routine to generate PDF plots using the Diversity Assay...
plotPNG
Routine to generate PNG plots using the Diversity Assay...
processDivMelt
Main Routine of the Diversity Assay Analysis Tool
statDivMelt
Statistical Output for the Diversity Assay Analysis Tool
training
Training data for Linear regression model

Files in this package

DivMelt
DivMelt/MD5
DivMelt/data
DivMelt/data/model.rda
DivMelt/inst
DivMelt/inst/sample_data
DivMelt/inst/sample_data/training.csv
DivMelt/man
DivMelt/man/modelDivMelt.Rd
DivMelt/man/DivMelt_gui.Rd
DivMelt/man/plotPNG.Rd
DivMelt/man/statDivMelt.Rd
DivMelt/man/processDivMelt.Rd
DivMelt/man/model.Rd
DivMelt/man/plotPDF.Rd
DivMelt/man/training.Rd
DivMelt/R
DivMelt/R/modelDivMelt.R
DivMelt/R/xgon.R
DivMelt/R/plotDivMelt.R
DivMelt/R/processDivMelt.R
DivMelt/R/gui.R
DivMelt/R/statDivMelt.R
DivMelt/DESCRIPTION
DivMelt/NAMESPACE