modelDivMelt: Routine to generate LASSO model for the Diversity Assay...
In DivMelt: HRM Diversity Assay Analysis Tool

Description Usage Arguments Author(s) Examples

View source: R/modelDivMelt.R

modelDivMelt uses the provided training set data to generate and save a LASSO model for linear regression analysis on future samples. The training set must be a comma separated file with the following columns:

Sample,min,max,mean,stddev,sigma,dmin,dmax,dmean,dstddev,positive

where:

Sample = sample name

min,max,mean and stddev - those measures w.r.t. fluorescence

sigma - sigma from linear model of fluorescence

dmin,dmax,dmean and dstddev - those measures w.r.t. delta fluorescence

positive - 0 if rejected (negative control), 1 if accepted

The output file is written as an R object. The default filename is model.rda.

1	modelDivMelt( trngFile, datFile)

`trngFile`	CSV file representing training set samples (required)
`datFile`	name of output model file (model.rda by default)

David Swan dswan@fhcrc.org

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library (DivMelt)
pkgDir<-system.file(package="DivMelt")
modelDivMelt(trngFile=paste(pkgDir,"/sample_data/training.csv",sep=''),datFile="new_model.rda")