crf_status_plot: Show the current CRF status distribution

In EDCimport: Import Data from EDC Software

Show the current CRF status distribution

Description

Generate a barplot showing the distribution of CRF status (Complete, Incomplete, ...) for each dataset of the database.

Usage

crf_status_plot(
  crfstat_col = "CRFSTAT",
  ...,
  details = FALSE,
  pal = edc_pal_crf(),
  crfstat_lvls = names(pal),
  x_label = "{dataset}",
  treat_as_worst = NULL
)

edc_pal_crf()

Arguments

crfstat_col	the column name of the CRF status
...	unused
details	whether to show all the CRF status levels. When FALSE (default), recode the status into "Complete", "Incomplete", or "No Data".
pal	the palette, defaulting to the helper EDCimport:::edc_pal_crf()
crfstat_lvls	the CRF status levels, from "best" to "worst". The plot is ordered by the "worst" level.
x_label	a glue pattern determining the tick label in the x axis. Available variables are c("nrow", "ncol", "n_id", "rows_per_id", "crfname"), taken from edc_lookup().
treat_as_worst	a regex for levels that should be treated as worst in the ordering

Value

a ggplot

Source

ggsci:::ggsci_db$lancet[["lanonc"]] %>% dput()

Examples

## Not run: 
#import a TM database and use load_list(), then:
crf_status_plot() + ggtitle(date_extraction)
crf_status_plot(pal=rev(edc_pal_crf()))
crf_status_plot(details=TRUE, treat_as_worst="No Data")
crf_status_plot(x_label="{crfname} (N={n_id}, n={nrow})")

p = crf_status_plot(details=TRUE)
p$data$crfstat %>% unique()
#> [1] "Incomplete"        "No Data Locked"    "No Data"           "Signed"           
#> [5] "Partial Monitored" "Monitored"         "Complete Locked"   "Complete" 

## End(Not run)

EDCimport documentation built on April 4, 2025, 1:18 a.m.