read_all_csv: Read all '.csv' files in a directory

In EDCimport: Import Data from EDC Software

Read all .csv files in a directory

Description

Read all .csv files in a directory, with labels if specified.

Usage

read_all_csv(
  path,
  ...,
  labels_from = NULL,
  clean_names_fun = NULL,
  read_fun = "guess",
  datetime_extraction = "guess",
  verbose = getOption("edc_read_verbose", 1)
)

Arguments

path	[character(1)] path to the directory containing .csv files.
...	unused
labels_from	[misc] list of path to file containing the labels.
clean_names_fun	[function] a function to clean column names, e.g. tolower, janitor::clean_names(),...
read_fun	[function] a function to read the files in path, e.g. read.csv(), read.csv2(),...
datetime_extraction	[dateish(1)] the datetime of database extraction (database lock). If "guess", the datetime will be inferred from the files modification time.
verbose	[numeric(1)] the level of verbosity

Value

a list containing one dataframe for each .csv file in the folder, the extraction date (datetime_extraction), and a summary of all imported tables (.lookup).

Labels file

labels_from should contain the information about column labels. It should be a data file (.csv) containing 2 columns: one for the column name and the other for its associated label. Use options(edc_col_name="xxx", edc_col_label="xxx") to specify the names of the columns.

EDCimport documentation built on April 4, 2025, 1:18 a.m.