EEM: Read and Preprocess Fluorescence Excitation-Emission Matrix (EEM) Data

Read raw EEM data and prepares them for further analysis.

Author
Vipavee Trivittayasil
Date of publication
2016-04-21 13:47:18
Maintainer
Vipavee Trivittayasil <vipavee.tri@gmail.com>
License
GPL-3
Version
1.1.1
URLs

View on CRAN

Man pages

AppleJuice
Apple juice
commonizeEEM
Smooth out the different dimensions of EEM data
cutEEM
Cut portions of EEM
delScattering
Delete scattering rays
delScattering2
Delete scattering rays
drawEEM
Draw contour for EEM data
drawEEMgg
Draw contour for EEM data using ggplot2
EEM
EEM: A package for reading and preprocessing fluorescence...
EEM-misc
Internal functions for EEM package
extract
Extract values from other models
findLocalMax
Find local maximum peaks
fold
Fold EEM matrix into a list
gluten
Gluten
normalize
Normalize data
plotLoading
Plot loadings for EEM data
plotReg
Plot regression coefficients for EEM data
plotScore
Plot score for prcomp result
plotScorem
Plot score matrix for prcomp result based on group
prcompname
Create name for prcomp result
print.EEM
Print EEM
readEEM
Read raw files and return a list
sub-.EEM
Subset EEM list
summary.EEM
SummarizeEEM EEM list
unfold
Unfold EEM list into a matrix

Files in this package

EEM
EEM/inst
EEM/inst/tests
EEM/inst/tests/test-unfold.R
EEM/inst/tests/test-delScattering.R
EEM/inst/tests/test-readEEM.R
EEM/inst/tests/test-cutEEM.R
EEM/inst/tests/data_format
EEM/inst/tests/data_format/shimadzu_RF-6000.txt
EEM/inst/tests/data_format/hitachi_F-7000.txt
EEM/inst/tests/data_format/JASCO_FP-8500.csv
EEM/inst/tests/data_format/horiba_aqualog.dat
EEM/inst/tests/data_format/hitachi_F-7000_Japanese.TXT
EEM/inst/tests/test-fold.R
EEM/inst/doc
EEM/inst/doc/file-io.Rmd
EEM/inst/doc/file-io.R
EEM/inst/doc/vignette.Rmd
EEM/inst/doc/vignette.R
EEM/inst/doc/file-io.html
EEM/inst/doc/vignette.html
EEM/NAMESPACE
EEM/data
EEM/data/gluten.rda
EEM/data/applejuice.rda
EEM/R
EEM/R/fold.R
EEM/R/unfold.R
EEM/R/findLocalMax.R
EEM/R/plotScore.R
EEM/R/printEEM.R
EEM/R/drawEEM.R
EEM/R/commonizeEEM.R
EEM/R/cutEEM.R
EEM/R/delScattering.R
EEM/R/EEM.R
EEM/R/plotLoading.R
EEM/R/EEM-misc.R
EEM/R/delScattering2.R
EEM/R/prcompname.R
EEM/R/drawEEMgg.R
EEM/R/plotScorem.R
EEM/R/plotReg.R
EEM/R/extract.R
EEM/R/normalize.R
EEM/R/summary.R
EEM/R/readEEM.R
EEM/R/subsetEEM.R
EEM/vignettes
EEM/vignettes/file-io.Rmd
EEM/vignettes/vignette.Rmd
EEM/MD5
EEM/build
EEM/build/vignette.rds
EEM/DESCRIPTION
EEM/man
EEM/man/print.EEM.Rd
EEM/man/delScattering2.Rd
EEM/man/summary.EEM.Rd
EEM/man/EEM-misc.Rd
EEM/man/commonizeEEM.Rd
EEM/man/plotScorem.Rd
EEM/man/findLocalMax.Rd
EEM/man/EEM.Rd
EEM/man/drawEEM.Rd
EEM/man/sub-.EEM.Rd
EEM/man/unfold.Rd
EEM/man/delScattering.Rd
EEM/man/plotReg.Rd
EEM/man/drawEEMgg.Rd
EEM/man/AppleJuice.Rd
EEM/man/fold.Rd
EEM/man/normalize.Rd
EEM/man/plotLoading.Rd
EEM/man/prcompname.Rd
EEM/man/cutEEM.Rd
EEM/man/gluten.Rd
EEM/man/plotScore.Rd
EEM/man/extract.Rd
EEM/man/readEEM.Rd