EMMIXcontrasts: Contrasts in mixed effects for EMMIX model with random effects.
Version 1.0.0

For forming contrasts in the mixed effects for mixtures of linear mixed models fitted to the gene profiles.

Browse man pages Browse package API and functions Browse package files

AuthorAngus Ng, Geoff McLachlan, Kui Wang.
Date of publication2014-02-23 08:05:59
MaintainerKui Wang <k.wang@uq.edu.au>
LicenseGPL-2 | GPL-3
Version1.0.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("EMMIXcontrasts")

Man pages

emmixwire: The EMMIX model with random effects
eq8.wire: Calculate the lamda values
expr.norm: The goldenspike gene expression data
hedenlc: The Hendenfalk data
mapping.unique: The map of goldenspike data
scores.wire: The weighted contrast
wire.init.fit: Get the initial values
wj2.permuted: The null distribution and p-value

Functions

emmixwire Man page
eq8.wire Man page
expr.norm Man page
hedenlc Man page
mapping.unique Man page
pvalue.wire Man page
scores.wire Man page
tau.estep.wire Man page
wire.init.fit Man page
wire.init.reg Man page
wj2.permuted Man page

Files

src
src/mixinit.c
src/Makevars
src/mstep.c
src/module.c
src/mixmsn.f
src/scamstep.f
src/mixem.c
src/emmix.h
src/mixmstda.f
src/density.c
src/mixmst.f
src/density2.f
src/predmixdamst.f
src/mixda.f
src/mixmvnda.f
src/mixmvtda.f
src/zeroin.c
src/mixmsnda.f
src/estep.c
src/predmixdamsn.f
src/scaestep.c
src/emmixfdr.c
NAMESPACE
data
data/hedenlc.rda
data/expr.norm.rda
data/mapping.unique.rda
R
R/EmmixWire2.R
MD5
DESCRIPTION
man
man/expr.norm.Rd
man/eq8.wire.Rd
man/scores.wire.Rd
man/mapping.unique.Rd
man/emmixwire.Rd
man/hedenlc.Rd
man/wj2.permuted.Rd
man/wire.init.fit.Rd
EMMIXcontrasts documentation built on April 14, 2017, 3:25 p.m.