EMMIXcontrasts: Contrasts in mixed effects for EMMIX model with random effects.

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For forming contrasts in the mixed effects for mixtures of linear mixed models fitted to the gene profiles.

Author
Angus Ng, Geoff McLachlan, Kui Wang.
Date of publication
2014-02-23 08:05:59
Maintainer
Kui Wang <k.wang@uq.edu.au>
License
GPL-2 | GPL-3
Version
1.0.0

View on CRAN

Man pages

emmixwire
The EMMIX model with random effects
eq8.wire
Calculate the lamda values
expr.norm
The goldenspike gene expression data
hedenlc
The Hendenfalk data
mapping.unique
The map of goldenspike data
scores.wire
The weighted contrast
wire.init.fit
Get the initial values
wj2.permuted
The null distribution and p-value

Files in this package

EMMIXcontrasts
EMMIXcontrasts/src
EMMIXcontrasts/src/mixinit.c
EMMIXcontrasts/src/Makevars
EMMIXcontrasts/src/mstep.c
EMMIXcontrasts/src/module.c
EMMIXcontrasts/src/mixmsn.f
EMMIXcontrasts/src/scamstep.f
EMMIXcontrasts/src/mixem.c
EMMIXcontrasts/src/emmix.h
EMMIXcontrasts/src/mixmstda.f
EMMIXcontrasts/src/density.c
EMMIXcontrasts/src/mixmst.f
EMMIXcontrasts/src/density2.f
EMMIXcontrasts/src/predmixdamst.f
EMMIXcontrasts/src/mixda.f
EMMIXcontrasts/src/mixmvnda.f
EMMIXcontrasts/src/mixmvtda.f
EMMIXcontrasts/src/zeroin.c
EMMIXcontrasts/src/mixmsnda.f
EMMIXcontrasts/src/estep.c
EMMIXcontrasts/src/predmixdamsn.f
EMMIXcontrasts/src/scaestep.c
EMMIXcontrasts/src/emmixfdr.c
EMMIXcontrasts/NAMESPACE
EMMIXcontrasts/data
EMMIXcontrasts/data/hedenlc.rda
EMMIXcontrasts/data/expr.norm.rda
EMMIXcontrasts/data/mapping.unique.rda
EMMIXcontrasts/R
EMMIXcontrasts/R/EmmixWire2.R
EMMIXcontrasts/MD5
EMMIXcontrasts/DESCRIPTION
EMMIXcontrasts/man
EMMIXcontrasts/man/expr.norm.Rd
EMMIXcontrasts/man/eq8.wire.Rd
EMMIXcontrasts/man/scores.wire.Rd
EMMIXcontrasts/man/mapping.unique.Rd
EMMIXcontrasts/man/emmixwire.Rd
EMMIXcontrasts/man/hedenlc.Rd
EMMIXcontrasts/man/wj2.permuted.Rd
EMMIXcontrasts/man/wire.init.fit.Rd