Description Usage Arguments Details Value See Also
This function calculates the lamda values in equation 2.8.
1 | eq8.wire(m,g,nb,X,W,U,V,sigma.e,sigma.b,sigma.c,nh,contrast)
|
m |
The number of columns in the data |
g |
The number of components in the mixture model |
nb |
The number of columns in the design matrix X |
X |
The design matrix X |
W |
The design matrix W |
U |
The design matrix U |
V |
The design matrix V |
sigma.e |
The covariance parameters of error item e |
sigma.b |
The covariance parameters of random item b |
sigma.c |
The covariance parameters of random item c |
nh |
A vector with each element as the number of genes in each cluster |
contrast |
The contrast vector, for example, c(1/2,1/2,-1) or c(1,0,-1), etc. |
The default contrast for two classes is c(1,-1), and three classes c(1/2,1/2,-1).
And it is called by function scores.wire
and wj2.permuted
.
A vector of lamda.
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