GetPathwayEdgeData: Get the edge sets of pathways

In ESEA: ESEA: Discovering the Dysregulated Pathways based on Edge Set Enrichment Analysis

Description

Get the edge sets of pathways for the seven pathway database (KEGG; Biocarta; Reactome; NCI; SPIKE; HumanCyc; Panther).

Usage

     GetPathwayEdgeData()

Details

The edge sets of pathways for the seven pathway database (KEGG; Biocarta; Reactome; NCI; SPIKE; HumanCyc; Panther) are obtained from the environment variable envData.

Value

A character vector, the length of this vector is the number of pathways.

Author(s)

Junwei Han <[e-mail]>, Xinrui Shi<[e-mail]> and Chunquan Li <[e-mail]>

Examples

## Not run: 

#obtain the edge sets of pathways.
pathwayEdge.db<-GetPathwayEdgeData()


## End(Not run)

ESEA documentation built on May 2, 2019, 3:41 p.m.