Maker.CH: Make a capture history from dates.

In EasyMARK: Utility functions for working with mark-recapture data.

Description

Creates a capture history from a vector of dates and individual ids.

Usage

Maker.CH(dates = dates, id = id, date.format)

Arguments

dates	a character vector or factor of dates in any format (see below).
id	a character vector or factor of unique ids the same length as the dates vector.
date.format	a character Rstring specifying how the date should be formatted.

Details

The vector of dates should, including date first marked. The date vector should line up with id vector, with ids repeated for each date the idvidual was re-captured or seen. Right now it assumes the capture occassions are per day. This might change in the future, allowing per month or per year time periods. Ids do not have to be sorted, but must be repeated for each date the individual is seen.

Value

ch	Returns a matrix of capture histories. Row names are the individual id names and column names are the dates that individual was seen

Author(s)

John Waller

Examples

#' our date vector, which should line up with the id vector
#' we would normally pull this from a data.frame from an external source
dates = c("2012_07_05","2012_07_01","2012_07_01", "2012_07_02", "2012_07_07", 
"2012_07_01", "2012_07_03", "2012_07_07")

#' ids lined up with our dates. Each id is repeated for each day seen, including the day 
#' it was marked.  
id = c("B","B","A","A","A","C","C","C")

#' See that our vectors are the same length
length(id)
length(dates)

#' date.format can be in a variety of forms: 
#' "%Y_%m_%d" = 2012_07_01
#' "%Y:%m:%d" = 2012:07:01
#' "%Y-%m-%d" = 2012-07-01
#' "%m-%Y-%d" = 07-2012-01
#' "%d-%m-%Y" = 01-07-2012
#' and so on...

#' run our function 
ch = Maker.CH(dates = dates, id = id, date.format = "%Y_%m_%d")


#' out matrix with colnames as the dates seen and rownames as the individual ids
ch

EasyMARK documentation built on May 2, 2019, 2:45 p.m.