EasyStrata: Evaluation of stratified genome-wide association meta-analysis results

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This is a pipelining tool that facilitates evaluation and visualisation of stratified genome-wide association meta-analyses (GWAMAs) results data. It provides (i) statistical methods to test and to account for between-strata difference and to clump genome-wide results into independent loci and (ii) extended graphical features (e.g., Manhattan, Miami and QQ plots) tailored for stratified GWAMA results.

Author
Thomas Winkler
Date of publication
2014-06-24 01:04:13
Maintainer
Thomas Winkler <thomas.winkler@klinik.uni-regensburg.de>
License
GPL-3
Version
8.6

View on CRAN

Man pages

EasyStrata
Function to run EasyStrata (v8.6).

Files in this package

EasyStrata
EasyStrata/inst
EasyStrata/inst/extdata
EasyStrata/inst/extdata/WHR_WOMEN.txt.gz
EasyStrata/inst/extdata/example_pipeline.ecf
EasyStrata/inst/extdata/WHR_MEN.txt.gz
EasyStrata/inst/doc
EasyStrata/inst/doc/EasyStrata_8.6_Commands_140615.pdf
EasyStrata/inst/doc/EasyStrata_8.6_Commands_140615.docx
EasyStrata/NAMESPACE
EasyStrata/R
EasyStrata/R/clsEXTRACTSNPS3.r
EasyStrata/R/clsINDEP7.r
EasyStrata/R/clsSPLOT21.r
EasyStrata/R/clsCALCULATE3.r
EasyStrata/R/clsADDCOL11.r
EasyStrata/R/clsREMOVECOL.r
EasyStrata/R/clsFDR3.r
EasyStrata/R/clsRENAMECOL2.r
EasyStrata/R/clsSTRSPLITCOL.r
EasyStrata/R/clsEDITCOL.r
EasyStrata/R/clsMHPLOT15.r
EasyStrata/R/clsFILTER6.r
EasyStrata/R/EasyX86.r
EasyStrata/R/clsMERGE11.r
EasyStrata/R/clsREPORT9.r
EasyStrata/R/fnEasyPLOT10.r
EasyStrata/R/clsBONFERRONI3.r
EasyStrata/R/clsMETAANALYSIS5.r
EasyStrata/R/clsCALCPDIFF6.r
EasyStrata/R/clsANNOTATE8.r
EasyStrata/R/clsCLEAN5.r
EasyStrata/R/clsEASYMERGE.r
EasyStrata/R/clsGETCOLS.r
EasyStrata/R/clsGWADATA45.r
EasyStrata/R/clsADJUSTALLELES15.r
EasyStrata/R/clsRPLOT18.r
EasyStrata/R/clsEVALSTAT7.r
EasyStrata/R/clsCRITERION6.r
EasyStrata/R/clsWRITE7.r
EasyStrata/R/clsRCD7.r
EasyStrata/R/clsJOINTTEST3.r
EasyStrata/R/clsMERGEEASYIN4.r
EasyStrata/R/clsQQPLOT17.r
EasyStrata/R/clsCALCPHET3.r
EasyStrata/R/clsEqcReader4.r
EasyStrata/R/clsMIAMIPLOT15.r
EasyStrata/R/clsGETNUM2.r
EasyStrata/R/clsCLUMP5.r
EasyStrata/R/clsGC5.r
EasyStrata/MD5
EasyStrata/DESCRIPTION
EasyStrata/man
EasyStrata/man/EasyStrata.Rd