eco.alfreq: Allelic frequency histograms for an ecogen genetic data frame
In EcoGenetics: Management and Exploratory Analysis of Spatial Data in Landscape Genetics
Description
Usage
Arguments
Author(s)
References
Examples
Description
This program computes the frequency of each allele and plots
a histogram for the number of alleles with a given frequency.
The distribution is expected to be L-shaped under mutation-drift equilibrium.
When a factor is given, the program plots a histogram for each group.
Usage
1
eco.alfreq(eco, grp = NULL)
Arguments
eco
Object of class "ecogen".
grp
Optional factor (column of the S slot) for plots by group.
Author(s)
Leandro Roser learoser@gmail.com
References
Luikart G., F. Allendorf, F. Cornuet, and W. Sherwin. 1998.
Distortion of allele frequency distributions provides a test for recent
population bottlenecks. Journal of Heredity, 89: 238-247.
Examples
1
2
3
4
5
6
7
8
## Not run:
data(eco.test)
eco.alfreq(eco)
eco.alfreq(eco, "pop")
## End(Not run)
EcoGenetics documentation built on July 8, 2020, 5:46 p.m.
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Description Usage Arguments Author(s) References Examples
Description
This program computes the frequency of each allele and plots a histogram for the number of alleles with a given frequency. The distribution is expected to be L-shaped under mutation-drift equilibrium. When a factor is given, the program plots a histogram for each group.
Usage
1 | eco.alfreq(eco, grp = NULL)
|
Arguments
eco |
Object of class "ecogen". |
grp |
Optional factor (column of the S slot) for plots by group. |
Author(s)
Leandro Roser learoser@gmail.com
References
Luikart G., F. Allendorf, F. Cornuet, and W. Sherwin. 1998. Distortion of allele frequency distributions provides a test for recent population bottlenecks. Journal of Heredity, 89: 238-247.
Examples
1 2 3 4 5 6 7 8 | ## Not run:
data(eco.test)
eco.alfreq(eco)
eco.alfreq(eco, "pop")
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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