EpiDynamics: Dynamic Models in Epidemiology

Mathematical models of infectious diseases in humans and animals. Both, deterministic and stochastic models can be simulated and plotted.

AuthorOswaldo Santos Baquero [aut, cre], Fernando Silveira Marques [aut]
Date of publication2015-12-03 23:28:14
MaintainerOswaldo Santos Baquero <oswaldosant@gmail.com>
LicenseGPL (>= 2)
Version0.3.0
https://github.com/oswaldosantos/EpiDynamics

View on CRAN

Man pages

EpiDynamics-package: The EpiDynamics Package

MultiStrainPartialImmunity: Partial immunity model that cycles (P 4.2).

PlotMods: Plot results of capm model functions

SEIR: SEIR model (2.6).

SEIR4AgeClasses: SEIR model with 4 age classes and yearly aging (P 3.4).

SEIRnStages: SEIR model with n stages (P 3.5).

SIR: Simple SIR model (P 2.1).

sir2AgeClasses: SIR model with 2 age classes (P 3.3).

SIR2Stages: SIR model with 2 age classes (P 3.3).

SIR2TypesImports: SIR model with two types of imports (P 6.6).

SIRAdditiveNoise: SIR model with constant additive noise (P 6.1).

SIRBirthDeath: SIR model with births and deaths (P 2.2).

SIRCarrierState: SIR model with carrier state (2.7).

SIRDemogStoch: SIR model with demographic stochasticity (P 6.4).

SIRInducedMortality: SIR model with disease induced mortality: Density-dependent...

SIRInducedMortality2: SIR model with disease induced mortality: frequency-dependent...

SIRPartialImmunity: SIR model with partial immunity (P 4.1).

SIRScaledAdditiveNoise: SIR model with Scaled additive noise (P 6.2).

SIRSinusoidalBirth: SIR model with sinusoidal births (P 5.3).

SIRSinusoidalForcing: SIR model with sinusoidal forcing (P 5.1).

SIRTauLeap: SIR model with tau leap method (P 6.5).

SIRTermTimeForcing: SIR model with corrected term-time forcing (P 5.2).

SIRVector: SIR model for mosquito vectors (P 4.4).

SIS: Simple SIS model (P 2.5).

SIS2RiskGroups: SIS model with 2 risk groups (P 3.1).

SISDemogStoch: SIS model with demographic stochasticity (P 6.3).

SISinusoidalTransmBrith: Rabbit Hemorrhagic Disease model with sinusoidal transmission...

SISnRiskGroups: SIS model with multiple risk groups (P 3.2).

SISPairwiseApprox: Pairwise SIS approximation model (P 7.8).

Files in this package

EpiDynamics
EpiDynamics/NAMESPACE
EpiDynamics/NEWS
EpiDynamics/R
EpiDynamics/R/EpiDynamics-package.R EpiDynamics/R/SIRScaledAdditiveNoise.R EpiDynamics/R/SIRCarrierState.R EpiDynamics/R/SIR.R EpiDynamics/R/SISinusoidalTransmBrith.R EpiDynamics/R/SIRSinusoidalBirth.R EpiDynamics/R/SIS.R EpiDynamics/R/SIRInducedMortality.R EpiDynamics/R/SIRTauLeap.R EpiDynamics/R/SIRSinusoidalForcing.R EpiDynamics/R/SISPairwiseApprox.R EpiDynamics/R/SEIRnStages.R EpiDynamics/R/MultiStrainPartialImmunity.R EpiDynamics/R/SIRInducedMortality2.R EpiDynamics/R/SEIR4AgeClasses.R EpiDynamics/R/SIR2TypesImports.R EpiDynamics/R/PlotMods.R EpiDynamics/R/SISDemogStoch.R EpiDynamics/R/SISnRiskGroups.R EpiDynamics/R/SIRTermTimeForcing.R EpiDynamics/R/SIRDemogStoch.R EpiDynamics/R/SIRPartialImmunity.R EpiDynamics/R/SIRVector.R EpiDynamics/R/SEIR.R EpiDynamics/R/SIS2RiskGroups.R EpiDynamics/R/SIR2AgeClasses.R EpiDynamics/R/SIRBirthDeath.R EpiDynamics/R/SIR2Stages.R EpiDynamics/R/SIRAdditiveNoise.R
EpiDynamics/README.md
EpiDynamics/MD5
EpiDynamics/DESCRIPTION
EpiDynamics/man
EpiDynamics/man/PlotMods.Rd EpiDynamics/man/SISinusoidalTransmBrith.Rd EpiDynamics/man/SIS2RiskGroups.Rd EpiDynamics/man/SIR2Stages.Rd EpiDynamics/man/SIRCarrierState.Rd EpiDynamics/man/SIRScaledAdditiveNoise.Rd EpiDynamics/man/SIR2TypesImports.Rd EpiDynamics/man/sir2AgeClasses.Rd EpiDynamics/man/SISDemogStoch.Rd EpiDynamics/man/SIRTauLeap.Rd EpiDynamics/man/SIRPartialImmunity.Rd EpiDynamics/man/SEIRnStages.Rd EpiDynamics/man/EpiDynamics-package.Rd EpiDynamics/man/SIRBirthDeath.Rd EpiDynamics/man/SIRTermTimeForcing.Rd EpiDynamics/man/SIRSinusoidalBirth.Rd EpiDynamics/man/SEIR.Rd EpiDynamics/man/SIR.Rd EpiDynamics/man/SIRDemogStoch.Rd EpiDynamics/man/SIRAdditiveNoise.Rd EpiDynamics/man/SIRInducedMortality2.Rd EpiDynamics/man/SIRInducedMortality.Rd EpiDynamics/man/SIRSinusoidalForcing.Rd EpiDynamics/man/SISnRiskGroups.Rd EpiDynamics/man/SISPairwiseApprox.Rd EpiDynamics/man/SEIR4AgeClasses.Rd EpiDynamics/man/MultiStrainPartialImmunity.Rd EpiDynamics/man/SIRVector.Rd EpiDynamics/man/SIS.Rd

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