EpiDynamics: Dynamic Models in Epidemiology
Version 0.3.0

Mathematical models of infectious diseases in humans and animals. Both, deterministic and stochastic models can be simulated and plotted.

Browse man pages Browse package API and functions Browse package files

AuthorOswaldo Santos Baquero [aut, cre], Fernando Silveira Marques [aut]
Date of publication2015-12-03 23:28:14
MaintainerOswaldo Santos Baquero <oswaldosant@gmail.com>
LicenseGPL (>= 2)
Version0.3.0
URL https://github.com/oswaldosantos/EpiDynamics
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("EpiDynamics")

Man pages

EpiDynamics-package: The EpiDynamics Package
MultiStrainPartialImmunity: Partial immunity model that cycles (P 4.2).
PlotMods: Plot results of capm model functions
SEIR: SEIR model (2.6).
SEIR4AgeClasses: SEIR model with 4 age classes and yearly aging (P 3.4).
SEIRnStages: SEIR model with n stages (P 3.5).
SIR: Simple SIR model (P 2.1).
sir2AgeClasses: SIR model with 2 age classes (P 3.3).
SIR2Stages: SIR model with 2 age classes (P 3.3).
SIR2TypesImports: SIR model with two types of imports (P 6.6).
SIRAdditiveNoise: SIR model with constant additive noise (P 6.1).
SIRBirthDeath: SIR model with births and deaths (P 2.2).
SIRCarrierState: SIR model with carrier state (2.7).
SIRDemogStoch: SIR model with demographic stochasticity (P 6.4).
SIRInducedMortality: SIR model with disease induced mortality: Density-dependent...
SIRInducedMortality2: SIR model with disease induced mortality: frequency-dependent...
SIRPartialImmunity: SIR model with partial immunity (P 4.1).
SIRScaledAdditiveNoise: SIR model with Scaled additive noise (P 6.2).
SIRSinusoidalBirth: SIR model with sinusoidal births (P 5.3).
SIRSinusoidalForcing: SIR model with sinusoidal forcing (P 5.1).
SIRTauLeap: SIR model with tau leap method (P 6.5).
SIRTermTimeForcing: SIR model with corrected term-time forcing (P 5.2).
SIRVector: SIR model for mosquito vectors (P 4.4).
SIS: Simple SIS model (P 2.5).
SIS2RiskGroups: SIS model with 2 risk groups (P 3.1).
SISDemogStoch: SIS model with demographic stochasticity (P 6.3).
SISinusoidalTransmBrith: Rabbit Hemorrhagic Disease model with sinusoidal transmission...
SISnRiskGroups: SIS model with multiple risk groups (P 3.2).
SISPairwiseApprox: Pairwise SIS approximation model (P 7.8).

Functions

EpiDynamics-package Man page
MultiStrainPartialImmunity Man page Source code
PlotMods Man page Source code
SEIR Man page Source code
SEIR4AgeClasses Man page Source code
SEIRnStages Man page Source code
SIR Man page Source code
SIR2Stages Man page Source code
SIR2TypesImports Man page Source code
SIRAdditiveNoise Man page Source code
SIRBirthDeath Man page Source code
SIRCarrierState Man page Source code
SIRDemogStoch Man page Source code
SIRInducedMortality Man page Source code
SIRInducedMortality2 Man page Source code
SIRPartialImmunity Man page Source code
SIRScaledAdditiveNoise Man page Source code
SIRSinusoidalBirth Man page Source code
SIRSinusoidalForcing Man page Source code
SIRTauLeap Man page Source code
SIRTermTimeForcing Man page Source code
SIRVector Man page Source code
SIS Man page Source code
SIS2RiskGroups Man page Source code
SISDemogStoch Man page Source code
SISPairwiseApprox Man page Source code
SISinusoidalTransmBrith Man page Source code
SISnRiskGroups Man page Source code
sir2AgeClasses Man page Source code

Files

NAMESPACE
NEWS
R
R/EpiDynamics-package.R
R/SIRScaledAdditiveNoise.R
R/SIRCarrierState.R
R/SIR.R
R/SISinusoidalTransmBrith.R
R/SIRSinusoidalBirth.R
R/SIS.R
R/SIRInducedMortality.R
R/SIRTauLeap.R
R/SIRSinusoidalForcing.R
R/SISPairwiseApprox.R
R/SEIRnStages.R
R/MultiStrainPartialImmunity.R
R/SIRInducedMortality2.R
R/SEIR4AgeClasses.R
R/SIR2TypesImports.R
R/PlotMods.R
R/SISDemogStoch.R
R/SISnRiskGroups.R
R/SIRTermTimeForcing.R
R/SIRDemogStoch.R
R/SIRPartialImmunity.R
R/SIRVector.R
R/SEIR.R
R/SIS2RiskGroups.R
R/SIR2AgeClasses.R
R/SIRBirthDeath.R
R/SIR2Stages.R
R/SIRAdditiveNoise.R
README.md
MD5
DESCRIPTION
man
man/PlotMods.Rd
man/SISinusoidalTransmBrith.Rd
man/SIS2RiskGroups.Rd
man/SIR2Stages.Rd
man/SIRCarrierState.Rd
man/SIRScaledAdditiveNoise.Rd
man/SIR2TypesImports.Rd
man/sir2AgeClasses.Rd
man/SISDemogStoch.Rd
man/SIRTauLeap.Rd
man/SIRPartialImmunity.Rd
man/SEIRnStages.Rd
man/EpiDynamics-package.Rd
man/SIRBirthDeath.Rd
man/SIRTermTimeForcing.Rd
man/SIRSinusoidalBirth.Rd
man/SEIR.Rd
man/SIR.Rd
man/SIRDemogStoch.Rd
man/SIRAdditiveNoise.Rd
man/SIRInducedMortality2.Rd
man/SIRInducedMortality.Rd
man/SIRSinusoidalForcing.Rd
man/SISnRiskGroups.Rd
man/SISPairwiseApprox.Rd
man/SEIR4AgeClasses.Rd
man/MultiStrainPartialImmunity.Rd
man/SIRVector.Rd
man/SIS.Rd
EpiDynamics documentation built on May 19, 2017, 8:09 a.m.