EpiDynamics: Dynamic Models in Epidemiology

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Mathematical models of infectious diseases in humans and animals. Both, deterministic and stochastic models can be simulated and plotted.

Author
Oswaldo Santos Baquero [aut, cre], Fernando Silveira Marques [aut]
Date of publication
2015-12-03 23:28:14
Maintainer
Oswaldo Santos Baquero <oswaldosant@gmail.com>
License
GPL (>= 2)
Version
0.3.0
URLs

View on CRAN

Man pages

EpiDynamics-package
The EpiDynamics Package
MultiStrainPartialImmunity
Partial immunity model that cycles (P 4.2).
PlotMods
Plot results of capm model functions
SEIR
SEIR model (2.6).
SEIR4AgeClasses
SEIR model with 4 age classes and yearly aging (P 3.4).
SEIRnStages
SEIR model with n stages (P 3.5).
SIR
Simple SIR model (P 2.1).
sir2AgeClasses
SIR model with 2 age classes (P 3.3).
SIR2Stages
SIR model with 2 age classes (P 3.3).
SIR2TypesImports
SIR model with two types of imports (P 6.6).
SIRAdditiveNoise
SIR model with constant additive noise (P 6.1).
SIRBirthDeath
SIR model with births and deaths (P 2.2).
SIRCarrierState
SIR model with carrier state (2.7).
SIRDemogStoch
SIR model with demographic stochasticity (P 6.4).
SIRInducedMortality
SIR model with disease induced mortality: Density-dependent...
SIRInducedMortality2
SIR model with disease induced mortality: frequency-dependent...
SIRPartialImmunity
SIR model with partial immunity (P 4.1).
SIRScaledAdditiveNoise
SIR model with Scaled additive noise (P 6.2).
SIRSinusoidalBirth
SIR model with sinusoidal births (P 5.3).
SIRSinusoidalForcing
SIR model with sinusoidal forcing (P 5.1).
SIRTauLeap
SIR model with tau leap method (P 6.5).
SIRTermTimeForcing
SIR model with corrected term-time forcing (P 5.2).
SIRVector
SIR model for mosquito vectors (P 4.4).
SIS
Simple SIS model (P 2.5).
SIS2RiskGroups
SIS model with 2 risk groups (P 3.1).
SISDemogStoch
SIS model with demographic stochasticity (P 6.3).
SISinusoidalTransmBrith
Rabbit Hemorrhagic Disease model with sinusoidal transmission...
SISnRiskGroups
SIS model with multiple risk groups (P 3.2).
SISPairwiseApprox
Pairwise SIS approximation model (P 7.8).

Files in this package

EpiDynamics
EpiDynamics/NAMESPACE
EpiDynamics/NEWS
EpiDynamics/R
EpiDynamics/R/EpiDynamics-package.R
EpiDynamics/R/SIRScaledAdditiveNoise.R
EpiDynamics/R/SIRCarrierState.R
EpiDynamics/R/SIR.R
EpiDynamics/R/SISinusoidalTransmBrith.R
EpiDynamics/R/SIRSinusoidalBirth.R
EpiDynamics/R/SIS.R
EpiDynamics/R/SIRInducedMortality.R
EpiDynamics/R/SIRTauLeap.R
EpiDynamics/R/SIRSinusoidalForcing.R
EpiDynamics/R/SISPairwiseApprox.R
EpiDynamics/R/SEIRnStages.R
EpiDynamics/R/MultiStrainPartialImmunity.R
EpiDynamics/R/SIRInducedMortality2.R
EpiDynamics/R/SEIR4AgeClasses.R
EpiDynamics/R/SIR2TypesImports.R
EpiDynamics/R/PlotMods.R
EpiDynamics/R/SISDemogStoch.R
EpiDynamics/R/SISnRiskGroups.R
EpiDynamics/R/SIRTermTimeForcing.R
EpiDynamics/R/SIRDemogStoch.R
EpiDynamics/R/SIRPartialImmunity.R
EpiDynamics/R/SIRVector.R
EpiDynamics/R/SEIR.R
EpiDynamics/R/SIS2RiskGroups.R
EpiDynamics/R/SIR2AgeClasses.R
EpiDynamics/R/SIRBirthDeath.R
EpiDynamics/R/SIR2Stages.R
EpiDynamics/R/SIRAdditiveNoise.R
EpiDynamics/README.md
EpiDynamics/MD5
EpiDynamics/DESCRIPTION
EpiDynamics/man
EpiDynamics/man/PlotMods.Rd
EpiDynamics/man/SISinusoidalTransmBrith.Rd
EpiDynamics/man/SIS2RiskGroups.Rd
EpiDynamics/man/SIR2Stages.Rd
EpiDynamics/man/SIRCarrierState.Rd
EpiDynamics/man/SIRScaledAdditiveNoise.Rd
EpiDynamics/man/SIR2TypesImports.Rd
EpiDynamics/man/sir2AgeClasses.Rd
EpiDynamics/man/SISDemogStoch.Rd
EpiDynamics/man/SIRTauLeap.Rd
EpiDynamics/man/SIRPartialImmunity.Rd
EpiDynamics/man/SEIRnStages.Rd
EpiDynamics/man/EpiDynamics-package.Rd
EpiDynamics/man/SIRBirthDeath.Rd
EpiDynamics/man/SIRTermTimeForcing.Rd
EpiDynamics/man/SIRSinusoidalBirth.Rd
EpiDynamics/man/SEIR.Rd
EpiDynamics/man/SIR.Rd
EpiDynamics/man/SIRDemogStoch.Rd
EpiDynamics/man/SIRAdditiveNoise.Rd
EpiDynamics/man/SIRInducedMortality2.Rd
EpiDynamics/man/SIRInducedMortality.Rd
EpiDynamics/man/SIRSinusoidalForcing.Rd
EpiDynamics/man/SISnRiskGroups.Rd
EpiDynamics/man/SISPairwiseApprox.Rd
EpiDynamics/man/SEIR4AgeClasses.Rd
EpiDynamics/man/MultiStrainPartialImmunity.Rd
EpiDynamics/man/SIRVector.Rd
EpiDynamics/man/SIS.Rd