Mathematical models of infectious diseases in humans and animals. Both, deterministic and stochastic models can be simulated and plotted.

Author | Oswaldo Santos Baquero [aut, cre], Fernando Silveira Marques [aut] |

Date of publication | 2015-12-03 23:28:14 |

Maintainer | Oswaldo Santos Baquero <oswaldosant@gmail.com> |

License | GPL (>= 2) |

Version | 0.3.0 |

https://github.com/oswaldosantos/EpiDynamics |

**EpiDynamics-package:** The EpiDynamics Package

**MultiStrainPartialImmunity:** Partial immunity model that cycles (P 4.2).

**PlotMods:** Plot results of capm model functions

**SEIR:** SEIR model (2.6).

**SEIR4AgeClasses:** SEIR model with 4 age classes and yearly aging (P 3.4).

**SEIRnStages:** SEIR model with n stages (P 3.5).

**SIR:** Simple SIR model (P 2.1).

**sir2AgeClasses:** SIR model with 2 age classes (P 3.3).

**SIR2Stages:** SIR model with 2 age classes (P 3.3).

**SIR2TypesImports:** SIR model with two types of imports (P 6.6).

**SIRAdditiveNoise:** SIR model with constant additive noise (P 6.1).

**SIRBirthDeath:** SIR model with births and deaths (P 2.2).

**SIRCarrierState:** SIR model with carrier state (2.7).

**SIRDemogStoch:** SIR model with demographic stochasticity (P 6.4).

**SIRInducedMortality:** SIR model with disease induced mortality: Density-dependent...

**SIRInducedMortality2:** SIR model with disease induced mortality: frequency-dependent...

**SIRPartialImmunity:** SIR model with partial immunity (P 4.1).

**SIRScaledAdditiveNoise:** SIR model with Scaled additive noise (P 6.2).

**SIRSinusoidalBirth:** SIR model with sinusoidal births (P 5.3).

**SIRSinusoidalForcing:** SIR model with sinusoidal forcing (P 5.1).

**SIRTauLeap:** SIR model with tau leap method (P 6.5).

**SIRTermTimeForcing:** SIR model with corrected term-time forcing (P 5.2).

**SIRVector:** SIR model for mosquito vectors (P 4.4).

**SIS:** Simple SIS model (P 2.5).

**SIS2RiskGroups:** SIS model with 2 risk groups (P 3.1).

**SISDemogStoch:** SIS model with demographic stochasticity (P 6.3).

**SISinusoidalTransmBrith:** Rabbit Hemorrhagic Disease model with sinusoidal transmission...

**SISnRiskGroups:** SIS model with multiple risk groups (P 3.2).

**SISPairwiseApprox:** Pairwise SIS approximation model (P 7.8).

EpiDynamics

EpiDynamics/NAMESPACE

EpiDynamics/NEWS

EpiDynamics/R

EpiDynamics/R/EpiDynamics-package.R
EpiDynamics/R/SIRScaledAdditiveNoise.R
EpiDynamics/R/SIRCarrierState.R
EpiDynamics/R/SIR.R
EpiDynamics/R/SISinusoidalTransmBrith.R
EpiDynamics/R/SIRSinusoidalBirth.R
EpiDynamics/R/SIS.R
EpiDynamics/R/SIRInducedMortality.R
EpiDynamics/R/SIRTauLeap.R
EpiDynamics/R/SIRSinusoidalForcing.R
EpiDynamics/R/SISPairwiseApprox.R
EpiDynamics/R/SEIRnStages.R
EpiDynamics/R/MultiStrainPartialImmunity.R
EpiDynamics/R/SIRInducedMortality2.R
EpiDynamics/R/SEIR4AgeClasses.R
EpiDynamics/R/SIR2TypesImports.R
EpiDynamics/R/PlotMods.R
EpiDynamics/R/SISDemogStoch.R
EpiDynamics/R/SISnRiskGroups.R
EpiDynamics/R/SIRTermTimeForcing.R
EpiDynamics/R/SIRDemogStoch.R
EpiDynamics/R/SIRPartialImmunity.R
EpiDynamics/R/SIRVector.R
EpiDynamics/R/SEIR.R
EpiDynamics/R/SIS2RiskGroups.R
EpiDynamics/R/SIR2AgeClasses.R
EpiDynamics/R/SIRBirthDeath.R
EpiDynamics/R/SIR2Stages.R
EpiDynamics/R/SIRAdditiveNoise.R
EpiDynamics/README.md

EpiDynamics/MD5

EpiDynamics/DESCRIPTION

EpiDynamics/man

EpiDynamics/man/PlotMods.Rd
EpiDynamics/man/SISinusoidalTransmBrith.Rd
EpiDynamics/man/SIS2RiskGroups.Rd
EpiDynamics/man/SIR2Stages.Rd
EpiDynamics/man/SIRCarrierState.Rd
EpiDynamics/man/SIRScaledAdditiveNoise.Rd
EpiDynamics/man/SIR2TypesImports.Rd
EpiDynamics/man/sir2AgeClasses.Rd
EpiDynamics/man/SISDemogStoch.Rd
EpiDynamics/man/SIRTauLeap.Rd
EpiDynamics/man/SIRPartialImmunity.Rd
EpiDynamics/man/SEIRnStages.Rd
EpiDynamics/man/EpiDynamics-package.Rd
EpiDynamics/man/SIRBirthDeath.Rd
EpiDynamics/man/SIRTermTimeForcing.Rd
EpiDynamics/man/SIRSinusoidalBirth.Rd
EpiDynamics/man/SEIR.Rd
EpiDynamics/man/SIR.Rd
EpiDynamics/man/SIRDemogStoch.Rd
EpiDynamics/man/SIRAdditiveNoise.Rd
EpiDynamics/man/SIRInducedMortality2.Rd
EpiDynamics/man/SIRInducedMortality.Rd
EpiDynamics/man/SIRSinusoidalForcing.Rd
EpiDynamics/man/SISnRiskGroups.Rd
EpiDynamics/man/SISPairwiseApprox.Rd
EpiDynamics/man/SEIR4AgeClasses.Rd
EpiDynamics/man/MultiStrainPartialImmunity.Rd
EpiDynamics/man/SIRVector.Rd
EpiDynamics/man/SIS.Rd
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