A Fast and Flexible Bayesian Tool for Estimating Epidemiological Parameters

cov19incidence2022 | Incidence data for Belgium in 2022 |

cov19mort2021 | Mortality data for Belgium in 2021 |

epicurve | Plot the epidemic curve |

episim | Simulation of an incidence time series |

eruptions | Eruption times in Yellowstone National Park |

estimIncub | Estimation of the incubation density based on coarse data |

estimR | Estimation of the reproduction number with... |

estimRmcmc | Estimation of the reproduction number with... |

histosmooth | Histogram smoothing with Laplacian-P-splines |

Idist | Density function and discrete distribution for a disease... |

incubsim | Simulation of incubation times |

influenza2009 | Data on the 2009 pandemic influenza in Pennsylvania |

nowcasting | Nowcasting and estimation of occurred but not yet reported... |

nowcastingR | Nowcasting the reproduction number |

perfRestim | Routine to measure the performance of estimR and estimRmcmc |

plot.Idist | Plot the interval distribution from an Idist object |

plot.incubestim | Plot the estimated incubation distribution |

plot.nowcasted | Plot of nowcasted cases and delay distribution |

plot.Rt | Plot the estimated reproduction number |

plot.Rtnow | Plot the nowcasted reproduction number |

Rmodelpriors | Prior specification for model hyperparameters |

sars2003 | Daily incidence of the 2003 SARS epidemic in Hong Kong |

summary.Rt | Summarize the estimated reproduction number |

zika2015 | Data on the 2015 Zika virus disease in Colombia |

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