EpiNow2: Estimate Real-Time Case Counts and Time-Varying Epidemiological Parameters

Estimates the time-varying reproduction number, rate of spread, and doubling time using a range of open-source tools (Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>), and current best practices (Gostic et al. (2020) <doi:10.1101/2020.06.18.20134858>). It aims to help users avoid some of the limitations of naive implementations in a framework that is informed by community feedback and is actively supported.

Package details

AuthorSam Abbott [aut, cre] (<https://orcid.org/0000-0001-8057-8037>), Joel Hellewell [aut] (<https://orcid.org/0000-0003-2683-0849>), Katharine Sherratt [aut], Katelyn Gostic [aut], Joe Hickson [aut], Hamada S. Badr [aut] (<https://orcid.org/0000-0002-9808-2344>), Michael DeWitt [aut] (<https://orcid.org/0000-0001-8940-1967>), Robin Thompson [ctb], Sophie Meakin [ctb], James Munday [ctb], Nikos Bosse [ctb], Paul Mee [ctb], Peter Ellis [ctb], Pietro Monticone [ctb], Lloyd Chapman [ctb], James M. Azam [ctb] (<https://orcid.org/0000-0001-5782-7330>), Andrew Johnson [ctb], EpiForecasts [aut], Sebastian Funk [aut] (<https://orcid.org/0000-0002-2842-3406>)
MaintainerSam Abbott <sam.abbott@lshtm.ac.uk>
LicenseMIT + file LICENSE
Version1.4.0
URL https://epiforecasts.io/EpiNow2/ https://epiforecasts.io/EpiNow2/dev/ https://github.com/epiforecasts/EpiNow2
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("EpiNow2")

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EpiNow2 documentation built on Sept. 26, 2023, 5:11 p.m.