Man pages for EpiReport
Epidemiological Report
| AERparams | Dataset describing the parameters for the epidemiological... |
| body_replace_gg_at_bkm | Replace a plot at a bookmark location |
| cleanECDCTable | Cleaning the final table |
| cleanMeasureCode | Clean the MeasureCode variable |
| DENGUE2019 | Dataset including Dengue data for 2015-2019 |
| EcdcColors | Colour palettes following the March 2018 ECDC guidelines for... |
| filterDisease | Filter disease parameters |
| getAER | Get full disease-specific epidemiological report |
| getAgeGender | Get disease-specific age and gender bar graph |
| getMap | Get disease-specific map: distribution of cases by Member... |
| getSeason | Get disease-specific seasonality graph: distribution of cases... |
| getTableByMS | Get disease-specific table: distribution of cases by Member... |
| getTemplate | Get epidemiological report (empty) template |
| getTrend | Get disease-specific trend plot: trend and number of cases by... |
| includeMap | Including PNG map in the 'Microsoft Word' template |
| MSCode | Dataset correspondence table between country names and... |
| orderQuasinum | Order 'quasinumerical' categorical vectors (increasing order) |
| plotAge | Age bar graph |
| plotAgeGender | Age and Gender bar graph |
| plotBar | Bar graph |
| plotBarGrouped | Grouped bar graph |
| plotBarGroupedH | Horizontal grouped bar graph |
| plotBarH | Horizontal bar graph |
| plotPie | Pie chart |
| plotSeasonality | Seasonality line graph |
| plotTS | Time series plot |
| plotTS12MAvg | Time series with 12-month moving average |
| plotTSGrouped | Multiple time series plot |
| previewMap | Previewing the PNG map |
| SALM2016 | Dataset including Salmonellosis data for 2012-2016 |
| shapeECDCFlexTable | Shaping the final table (layout, title, color, font) |
| toCapTitle | Capitalise first letter |
