write.beast.treedata: Export multiple treedata objects (S4 class tree files) to...

In EvoPhylo: Pre- And Postprocessing of Morphological Data from Relaxed Clock Bayesian Phylogenetics

Export multiple treedata objects (S4 class tree files) to BEAST NEXUS file

Description

This function was adopted and modified from treeio::write.beast to export a list of trees instead of a single tree.

Usage

write.beast.treedata(treedata, file = "",
                    translate = TRUE, tree.name = "STATE")

Arguments

treedata	An S4 class object of type treedata containing multiple trees; e.g. a Bayesian clock tree distribution imported using treeio::read.beast or treeio::read.mrbayes.
file	Output file. If file = "", prints the output content on screen.
translate	Whether to translate taxa labels.
tree.name	Name of the trees, default "STATE".

Value

Writes object type treedata containing multiple trees to a file or file content on screen

Examples

#Load file with multiple trees
## Not run: 
trees_file = system.file("extdata", "ex_offset.trees", package = "EvoPhylo")
posterior_trees_offset = treeio::read.beast(trees_file)

#Write multiple trees to screen
write.beast.treedata(posterior_trees_offset)

## End(Not run)

EvoPhylo documentation built on Nov. 4, 2022, 1:06 a.m.