Man pages for FAMetA
Fatty Acid Metabolic Analysis
| addFA | Add missing FA annotations |
| annotateFA | FA annotation |
| blankSubstraction | substract blank samples. |
| changeFArt | Modify rt peak limits of annotated FAs |
| checkparameters | check S and E steps based on isotopologue distribution. |
| combAcetate | acetate combinations for M+0, M+1 and M+2. |
| correctNatAb13C | correct data for natural abundance of 13C using accucor... |
| curateFAannotations | Modify FA annotations |
| dataCorrection | Data correction for natural abundance of 13C and data... |
| dataElong | data list for elongation analysis. |
| dataSynth | data list for synthesis analysis. |
| desaturationAnalysis | Desaturation analysis of fatty acids. |
| desaturationsdb | Desaturation reactions database. |
| elongationAnalysis | Elongation analysis of fatty acids longer than 16 carbons. |
| elongationqmult | calculate FA isotope distribution for elongated FAs using the... |
| estimatePars | Fit FA isotope distribution with non-linear regression using... |
| estimateSynthesis | estimate synthesis parameters. |
| examplefadata | Example fadata list. |
| externalNormalization | External normalization using additional measures (i.e.... |
| fattyacidsdb | Fatty Acids database. |
| fitSSE | Fit FA isotope distribution with non-linear regression and... |
| getFormula | Get formula and neutral mass for annotated compounds |
| getResultsTable | Obtain the final results table from synthesis, elongation and... |
| getSummaryTable | Obtain a summary results table. |
| gridElong | generate starting points grid for elongation analysis. |
| gridSynth | generate starting points grid for synthesis analysis. |
| heatmapResults | Plot results on a heatmap. |
| msbatch2fadata | Extract FA data from an annotated msbatch. |
| mzMatch | mz match withing a vector of mz values |
| normalizeIS | Data normalization using internal stardards. |
| parameters | Parameters for FA metabolic analysis. |
| plotDistributions | Plot observed and predicted isotope distributions. |
| plotFA | Plot FA EICs |
| plotResults | Plot observed and predicted isotope distributions from the... |
| readfadatafile | read FA data from a csv file. |
| removeFA | Remove incorrect FA annotations |
| runElongationAnalysis | run the elongation analysis. |
| runSynthesisAnalysis | run synthesis analysis. |
| searchFAisotopes | Search FA isotopes |
| searchIS | Search internal stardards. |
| ssexamplefadata | Toy example fadata list. |
| summarizeResults | Obtain result tables and heatmaps that help interpreting your... |
| synthesisAnalysis | De novo synthesis analysis of fatty acids until 16 carbons. |
| synthesisqmult | calculate FA isotope distribution for newly synthesized FAs... |
