FBN: FISH Based Normalization and Copy Number inference of SNP microarray data
Version 1.5.1

Normalizes the data from a file containing the raw values of the SNP probes of microarrray data by using the FISH probes and their corresponding CNs.

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AuthorAdrian Andronache <adi.andronache@gmail.com>, Luca Agnelli <luca.agnelli@gmail.com>
Date of publication2012-03-26 09:27:00
MaintainerLuca Agnelli <luca.agnelli@gmail.com>
LicenseGPL (>= 2)
Version1.5.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("FBN")

Man pages

FBN.histogramMaxima: Local maxima of the histogram of SNP microarray data
FBN.kmeans: K-Means clustering of SNP microarray data
FBNormalization: FISH Based Normalization and Copy Number inference of SNP...
FBN-package: FISH Based Normalization and Copy Number inference of SNP...
FBN.valueCenter: The SNP normalization function
FISHprobes: Sample data for FBN package
hmcls: Sample data for FBN package
meanFilter: 1D Mean Filter
medianFilter: 1D Median Filter

Functions

FBN Man page
FBN-package Man page
FBN.histogramMaxima Man page Source code
FBN.kmeans Man page Source code
FBN.valueCenter Man page Source code
FBNormalization Man page Source code
FISHprobes Man page
hmcls Man page
meanFilter Man page Source code
medianFilter Man page Source code

Files

MD5
R
R/medianFilter.R
R/meanFilter.R
R/FBNormalization.R
R/FBN.valueCenter.R
R/FBN.kmeans.R
R/FBN.histogramMaxima.R
NAMESPACE
man
man/medianFilter.Rd
man/meanFilter.Rd
man/hmcls.rd
man/FISHprobes.rd
man/FBNormalization.Rd
man/FBN.valueCenter.Rd
man/FBN.kmeans.Rd
man/FBN.histogramMaxima.Rd
man/FBN-package.Rd
DESCRIPTION
data
data/hmcls.rda
data/FISHprobes.txt.gz
data/datalist
FBN documentation built on May 19, 2017, 8:25 p.m.