FBN: FISH Based Normalization and Copy Number inference of SNP microarray data

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Normalizes the data from a file containing the raw values of the SNP probes of microarrray data by using the FISH probes and their corresponding CNs.

Author
Adrian Andronache <adi.andronache@gmail.com>, Luca Agnelli <luca.agnelli@gmail.com>
Date of publication
2012-03-26 09:27:00
Maintainer
Luca Agnelli <luca.agnelli@gmail.com>
License
GPL (>= 2)
Version
1.5.1

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Man pages

FBN.histogramMaxima
Local maxima of the histogram of SNP microarray data
FBN.kmeans
K-Means clustering of SNP microarray data
FBNormalization
FISH Based Normalization and Copy Number inference of SNP...
FBN-package
FISH Based Normalization and Copy Number inference of SNP...
FBN.valueCenter
The SNP normalization function
meanFilter
1D Mean Filter
medianFilter
1D Median Filter

Files in this package

FBN
FBN/MD5
FBN/R
FBN/R/medianFilter.R
FBN/R/meanFilter.R
FBN/R/FBNormalization.R
FBN/R/FBN.valueCenter.R
FBN/R/FBN.kmeans.R
FBN/R/FBN.histogramMaxima.R
FBN/NAMESPACE
FBN/man
FBN/man/medianFilter.Rd
FBN/man/meanFilter.Rd
FBN/man/hmcls.rd
FBN/man/FISHprobes.rd
FBN/man/FBNormalization.Rd
FBN/man/FBN.valueCenter.Rd
FBN/man/FBN.kmeans.Rd
FBN/man/FBN.histogramMaxima.Rd
FBN/man/FBN-package.Rd
FBN/DESCRIPTION
FBN/data
FBN/data/hmcls.rda
FBN/data/FISHprobes.txt.gz
FBN/data/datalist