FIT: Transcriptomic Dynamics Models in Field Conditions

Provides functionality for constructing statistical models of transcriptomic dynamics in field conditions. It further offers the function to predict expression of a gene given the attributes of samples and meteorological data.

AuthorKoji Iwayama [cre], Yuri Aisaka [aut]
Date of publication2016-11-28 13:04:25
MaintainerKoji Iwayama <fieldtranscriptome@gmail.com>
LicenseMPL (>= 2) | file LICENSE
Version0.0.4

View on CRAN

Files

FIT
FIT/inst
FIT/inst/extdata
FIT/inst/extdata/Jma.stations.csv
FIT/inst/extdata/train.weather
FIT/inst/extdata/prediction.weather
FIT/inst/extdata/rna-seq
FIT/inst/extdata/train.expression
FIT/inst/extdata/train.attribute
FIT/inst/extdata/prediction.expression
FIT/inst/extdata/prediction.attribute
FIT/inst/doc
FIT/inst/doc/FIT.Rmd
FIT/inst/doc/FIT.html
FIT/inst/doc/FIT.R
FIT/src
FIT/src/Makevars
FIT/src/model.h
FIT/src/grid.h
FIT/src/init.h
FIT/src/optim.h
FIT/src/Makevars.win
FIT/src/RcppExports.cpp
FIT/src/train.cpp
FIT/src/prep.h
FIT/NAMESPACE
FIT/R
FIT/R/Train.R FIT/R/JmaStations.R FIT/R/Model.R FIT/R/Norm.R FIT/R/JmaCsv.R FIT/R/RcppExports.R FIT/R/IO.R FIT/R/JmaWeb.R FIT/R/FIT.R
FIT/vignettes
FIT/vignettes/FIT.Rmd
FIT/vignettes/bibliography.bib
FIT/MD5
FIT/build
FIT/build/vignette.rds
FIT/DESCRIPTION
FIT/man
FIT/man/fit.models.Rd FIT/man/init.Rd FIT/man/load.expression.Rd FIT/man/optim.Rd FIT/man/load.attribute.Rd FIT/man/make.recipe.Rd FIT/man/train.to.predict.adaptor.Rd FIT/man/predict.Rd FIT/man/weather.entries.Rd FIT/man/train.Rd FIT/man/FIT.Rd FIT/man/load.weather.Rd FIT/man/prediction.errors.Rd FIT/man/load.weight.Rd
FIT/LICENSE

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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