FMM-methods: Methods for objects of class "FMM"

In FMM: Rhythmic Patterns Modeling by FMM Models

Description

The methods for objects of class 'FMM' are:

coef	coef method for S4 class 'FMM',
summary	summary method for S4 class 'FMM',
fitted	fitted method for S4 class 'FMM',
resid	resid method for S4 class 'FMM'.

Usage

## S4 coef method for signature 'FMM'
coef(object,...)

## S4 summary method for signature 'FMM'
summary(object,...)

## S4 fitted method for signature 'FMM'
fitted(object,...)

## S4 resid method for signature 'FMM'
resid(object,...)

Arguments

object	object of class 'FMM'.
...	additional arguments passed to the method.

Value

• The function coef() returns a list with two components:

  	M	A numeric value. The estimated intercept parameter M.
  	wave	A data.frame with the estimates of each FMM wave parameters. It is organised as one component per row.

• The function summary() displays relevant results of the fitting. When it is assigned, this function returns a list with the following components:

  	coef	The list returns by the function coef().
  	peak.time	A data.frame with the estimates of the peak and trough times of each wave. It is organised as one component per row.
  	resid	The vector of residuals.
  	R.squared	A numerical value with the R squared of each wave. The total R square is computed as the sum of the contribution of each component.

• The function fitted() returns a data.frame with two columns: timePoints and fittedValues.

• The function resid() returns a numeric vector with residuals of the model.

Examples

## Generate example data:
fmm2.data <- generateFMM(0, rep(2, 2), c(1.5, 3.4), c(0.2, 2.3), c(0.1, 0.2),
                    plot = FALSE, outvalues = TRUE,
                    sigmaNoise = 0.5) # add a gaussian noise with sigma = 0.5

## Fit the FMM model with nback = 2 component
## fit is an object of S4 class 'FMM'
fit <- fitFMM(vData = fmm2.data$y,timePoints = fmm2.data$t,nback = 2,
              lengthAlphaGrid = 24,lengthOmegaGrid = 10)

## Extract coefficients of the model:
coef(fit)

## Summarize results:
summary(fit)

## Results on a list:
res <- summary(fit)
res$peak.time # fiducial points

## fitted values:
fit.values <- fitted(fit)

## residuals
res <- resid(fit)

FMM documentation built on Dec. 17, 2021, 5:06 p.m.