FREGAT: Family REGional Association Tests

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Fast regional association analysis of quantitative traits for family-based and population studies.

Author
Nadezhda M. Belonogova <belon@bionet.nsc.ru> and Gulnara R. Svishcheva <gulsvi@mail.ru>, with contributions from: Seunggeun Lee (kernel functions), Pierre Lafaye de Micheaux ('davies' method), Thomas Lumley ('kuonen' method), James O. Ramsay (functional data analysis functions), David Clayton ('read.plink' function) and Brian Ripley ('ginv' function)
Date of publication
2016-09-19 11:09:59
Maintainer
Nadezhda M. Belonogova <belon@bionet.nsc.ru>
License
GPL-3
Version
1.0.2

View on CRAN

Files in this package

FREGAT
FREGAT/inst
FREGAT/inst/testfiles
FREGAT/inst/testfiles/sample.bed
FREGAT/inst/testfiles/sample.fam
FREGAT/inst/testfiles/sample.bim
FREGAT/inst/testfiles/1000g.phase1.20110521.CFH.var.anno.vcf.gz
FREGAT/inst/testfiles/refFlat_hg19_6col.txt.gz
FREGAT/inst/testfiles/sample.info
FREGAT/inst/testfiles/1000g.phase1.20110521.CFH.var.anno.vcf.gz.tbi
FREGAT/inst/doc
FREGAT/inst/doc/FREGAT-manual.pdf
FREGAT/src
FREGAT/src/asnum.c
FREGAT/src/uncertain.c
FREGAT/src/ruben.cpp
FREGAT/src/uncertain.h
FREGAT/src/subset.c
FREGAT/src/Rmissing.h
FREGAT/src/kernel_func.c
FREGAT/src/qfc.cpp
FREGAT/src/plink.c
FREGAT/NAMESPACE
FREGAT/data
FREGAT/data/example.data.RData
FREGAT/R
FREGAT/R/PVE.R
FREGAT/R/create.constant.basis.R
FREGAT/R/polylik.R
FREGAT/R/create.bspline.basis.R
FREGAT/R/int2Lfd.R
FREGAT/R/SnpMatrix.R
FREGAT/R/eval.fd.R
FREGAT/R/eval.basis.R
FREGAT/R/fourier.R
FREGAT/R/read.plink.R
FREGAT/R/fd2list.R
FREGAT/R/chisqsum.R
FREGAT/R/genotypes.R
FREGAT/R/function.R
FREGAT/R/seqminer.R
FREGAT/R/create.fourier.basis.R
FREGAT/R/analyze.R
FREGAT/R/is.eqbasis.R
FREGAT/R/check.input.R
FREGAT/R/rangechk.R
FREGAT/R/ppBspline.R
FREGAT/R/bsplineS.R
FREGAT/R/ppderiv.R
FREGAT/R/fd.R
FREGAT/R/inprod.R
FREGAT/R/inprod.bspline.R
FREGAT/R/kernels.R
FREGAT/R/KMTest_Optimal.R
FREGAT/R/Lfd.R
FREGAT/R/fixed.effects.R
FREGAT/R/polyprod.R
FREGAT/R/random.effects.R
FREGAT/R/single.point.R
FREGAT/R/basisfd.R
FREGAT/R/davies.R
FREGAT/R/check.spec.R
FREGAT/R/getbasismatrix.R
FREGAT/R/null.R
FREGAT/R/do.regional.R
FREGAT/R/main.R
FREGAT/MD5
FREGAT/DESCRIPTION
FREGAT/man
FREGAT/man/single.point.rd
FREGAT/man/example.data.rd
FREGAT/man/famBT.rd
FREGAT/man/read.plink.rd
FREGAT/man/null.rd
FREGAT/man/MLR.rd
FREGAT/man/famFLM.rd
FREGAT/man/FFBSKAT.rd
FREGAT/man/FREGAT-package.rd