API for FREGAT
Family REGional Association Tests
| Global functions | |
|---|---|
| FFBSKAT | Man page |
| FREGAT-package | Man page |
| Get_Lambda | Source code |
| Get_Liu_PVal.MOD | Source code |
| Get_Liu_PVal.MOD.Lambda | Source code |
| Get_Liu_PVal.MOD.Lambda.Zero | Source code |
| Get_Liu_Params | Source code |
| Get_Liu_Params_Mod | Source code |
| Get_Liu_Params_Mod_Lambda | Source code |
| Get_PValue.Lambda | Source code |
| Lfd | Source code |
| MLR | Man page |
| NullMixedModel | Source code |
| PC | Source code |
| PCA | Man page |
| SKAT_Optiaml_Each_Q | Source code |
| SKAT_Optimal_Get_Pvalue | Source code |
| SKAT_Optimal_Integrate_Func_Davies | Source code |
| SKAT_Optimal_Integrate_Func_Kuonen | Source code |
| SKAT_Optimal_Integrate_Func_Liu | Source code |
| SKAT_Optimal_PValue_Davies_Kuonen | Source code |
| SKAT_Optimal_PValue_Liu | Source code |
| SKAT_Optimal_Param | Source code |
| SnpMatrix2numeric | Source code |
| analyze.region | Source code |
| analyze.single | Source code |
| basisfd | Source code |
| bsplineS | Source code |
| call_Kernel_2wayIX | Source code |
| call_Kernel_IBS | Source code |
| call_Kernel_IBS_Weight | Source code |
| check.basis | Source code |
| check.cores | Source code |
| check.covariates | Source code |
| check.geno | Source code |
| check.ini | Source code |
| check.method | Source code |
| check.nullmod | Source code |
| check.regions | Source code |
| check.rho | Source code |
| check.spec.famFLM | Source code |
| check.spec.famSKAT | Source code |
| check.weights | Source code |
| create.bspline.basis | Source code |
| create.constant.basis | Source code |
| create.fourier.basis | Source code |
| davies | Source code |
| eval.basis | Source code |
| eval.fd | Source code |
| example.data | Man page |
| famBT | Man page |
| famFLM | Man page |
| fd | Source code |
| fd2list | Source code |
| fdchk | Source code |
| fitted.fdSmooth | Source code |
| flipper | Source code |
| fourier | Source code |
| genodata | Man page |
| genotypes | Source code |
| getbasismatrix | Source code |
| ginv | Source code |
| hasIndex | Source code |
| inprod | Source code |
| inprod.bspline | Source code |
| int2Lfd | Source code |
| is.eqbasis | Source code |
| isURL | Source code |
| kin | Man page |
| knotmultchk | Source code |
| local.file.exists | Source code |
| lskmTest.GetKernel | Source code |
| make.call | Source code |
| null | Man page |
| numberPCA | Source code |
| pchisqsum | Source code |
| phenodata | Man page |
| polyprod | Source code |
| ppBspline | Source code |
| ppderiv | Source code |
| predict.fd | Source code |
| predict.fdPar | Source code |
| predict.fdSmooth | Source code |
| pval.MLR | Source code |
| pval.PCA | Source code |
| pval.famBT | Source code |
| pval.famFLM | Source code |
| pval.famSKAT | Source code |
| pval.famSKATO | Source code |
| pval.single | Source code |
| rangechk | Source code |
| read.plink | Man page Source code |
| read.plink.names | Source code |
| read.plink.region | Source code |
| read.vcf | Source code |
| read.vcf.pos | Source code |
| residuals.fdSmooth | Source code |
| saddle | Source code |
| single.point | Man page |
| snpdata | Man page |
| subset.SnpMatrix | Source code |
| sumstat.famSKAT | Source code |
| sumstat.famSKATO | Source code |
| tau.fun | Source code |
| tau3 | Source code |
| tau3.old | Source code |
