FREddyPro: Post-Processing EddyPro Full Output File

Despike, ustar filtering, plotting, footprint modelling and general post-processing of a standard EddyPro full output file (LI-COR Inc 2011-2015 <https://www.licor.com/env/products/eddy_covariance/eddypro.html>).

Author
Georgios Xenakis
Date of publication
2016-09-11 19:14:19
Maintainer
Georgios Xenakis <georgios.xenakis@forestry.gsi.gov.uk>
License
GPL-3
Version
1.0

View on CRAN

Man pages

addSiteName
Create an extra column in a data frame with the name of the...
Average
Average flux footprint
buildTimestamp
Build a timestamp
Calculate
Kormann and Meixner 2001 flux footprint model
calculateFootprint
Minimum argument footprint calculation
calculatePercentFootprint
Calculate Percent Footprint
cleanFluxes
Cleaning and de-spiking fluxes
cleanSecondVar
Clean a second variable
cleanVar
Clean a variable
cleanVarG
Clean a variable above a threshold
cleanVarL
Clean a variable below a threshold
continuity
Check timeseries continuity
createTimestamp
Create a time stamp
distClean
Distributional cleaning
exportFootprintPoints
Write footprint as points
fillTimestamp
Fill timestamp gaps
fluxes
Fluxes from Harwood forest
FREddyPro-package
\Sexpr[results=rd,stage=build]{tools:::Rd_package_title("FREddyPro")}
harwood
CSV EddyPro output file for Harwood forest
lue_model
Light use efficiency model
midpoints
Mid-point of a class
percentNA
Percent of NA values
percentQC
Percent of each QC
plotDaily
Plot average daily patterns
plotDiurnal
Plot average diurnal patterns
plotFingerprint
Plot a fingerprint graph
plotFootprint
Plot a tower footprint
plotMonthly
Plot monthly averages
plotQC
Plot using QC flags
plotSpectra
Plot spectra
plotTimeseries
Plot a time series plot
plotWindrose
Plot a wind rose
polar2cart
Polar to cartesian
qcClean
Clean using QC flag
readEddyPro
Read EddyPro full output
readFile
Read a file
removeDuplicates
Remove duplicates
removeOutliers
Remove outliers
rotateMatrix
Rotate a matrix
sdClean
Clean using standard deviation
spectra
Ensemble spectra from semi-enclosed IRGA at Harwood forest
ustarThreshold
Find the u* threshold

Files in this package

FREddyPro
FREddyPro/NAMESPACE
FREddyPro/data
FREddyPro/data/spectra.rda
FREddyPro/data/harwood.csv.gz
FREddyPro/data/datalist
FREddyPro/data/fluxes.rda
FREddyPro/R
FREddyPro/R/distClean.r
FREddyPro/R/fillTimestamp.r
FREddyPro/R/removeOutliers.r
FREddyPro/R/removeDuplicates.r
FREddyPro/R/plotQC.r
FREddyPro/R/calculateFootprint.r
FREddyPro/R/readEddyPro.r
FREddyPro/R/plotMonthly.r
FREddyPro/R/continuity.r
FREddyPro/R/functions.r
FREddyPro/R/cleanFluxes.r
FREddyPro/R/rotateMatrix.r
FREddyPro/R/writeFootprintPoints.r
FREddyPro/R/cleanVarL.r
FREddyPro/R/readFile.r
FREddyPro/R/plotFootprint.r
FREddyPro/R/percentQC.r
FREddyPro/R/plotDiurnal.r
FREddyPro/R/plotSpectra.r
FREddyPro/R/sdClean.r
FREddyPro/R/plotWindrose.r
FREddyPro/R/buildTimestamp.r
FREddyPro/R/cleanSecondVar.r
FREddyPro/R/qcClean.r
FREddyPro/R/cleanVarG.r
FREddyPro/R/midpoints.r
FREddyPro/R/addSiteName.r
FREddyPro/R/calculatePercentFootprint.r
FREddyPro/R/cleanVar.r
FREddyPro/R/polar2cart.r
FREddyPro/R/ustar_threshold.r
FREddyPro/R/percentNA.r
FREddyPro/R/plotTimeseries.r
FREddyPro/R/lue_model.r
FREddyPro/R/createTimestamp.r
FREddyPro/R/plotFingerprint.r
FREddyPro/R/footprint.r
FREddyPro/R/plotDaily.r
FREddyPro/MD5
FREddyPro/build
FREddyPro/build/partial.rdb
FREddyPro/DESCRIPTION
FREddyPro/man
FREddyPro/man/calculatePercentFootprint.Rd
FREddyPro/man/readEddyPro.Rd
FREddyPro/man/exportFootprintPoints.Rd
FREddyPro/man/lue_model.Rd
FREddyPro/man/cleanVar.Rd
FREddyPro/man/calculateFootprint.Rd
FREddyPro/man/polar2cart.Rd
FREddyPro/man/ustarThreshold.Rd
FREddyPro/man/cleanVarL.Rd
FREddyPro/man/qcClean.Rd
FREddyPro/man/percentQC.Rd
FREddyPro/man/sdClean.Rd
FREddyPro/man/plotTimeseries.Rd
FREddyPro/man/spectra.Rd
FREddyPro/man/buildTimestamp.Rd
FREddyPro/man/rotateMatrix.Rd
FREddyPro/man/plotQC.Rd
FREddyPro/man/plotDiurnal.Rd
FREddyPro/man/readFile.Rd
FREddyPro/man/harwood.Rd
FREddyPro/man/cleanFluxes.Rd
FREddyPro/man/continuity.Rd
FREddyPro/man/cleanVarG.Rd
FREddyPro/man/plotMonthly.Rd
FREddyPro/man/Average.Rd
FREddyPro/man/createTimestamp.Rd
FREddyPro/man/removeDuplicates.Rd
FREddyPro/man/midpoints.Rd
FREddyPro/man/fluxes.Rd
FREddyPro/man/FREddyPro-package.Rd
FREddyPro/man/cleanSecondVar.Rd
FREddyPro/man/plotWindrose.Rd
FREddyPro/man/Calculate.Rd
FREddyPro/man/plotDaily.Rd
FREddyPro/man/removeOutliers.Rd
FREddyPro/man/plotFingerprint.Rd
FREddyPro/man/percentNA.Rd
FREddyPro/man/plotFootprint.Rd
FREddyPro/man/distClean.Rd
FREddyPro/man/plotSpectra.Rd
FREddyPro/man/fillTimestamp.Rd
FREddyPro/man/addSiteName.Rd