FREddyPro: Post-Processing EddyPro Full Output File

Despike, ustar filtering, plotting, footprint modelling and general post-processing of a standard EddyPro full output file (LI-COR Inc 2011-2015 <https://www.licor.com/env/products/eddy_covariance/eddypro.html>).

AuthorGeorgios Xenakis
Date of publication2016-09-11 19:14:19
MaintainerGeorgios Xenakis <georgios.xenakis@forestry.gsi.gov.uk>
LicenseGPL-3
Version1.0

View on CRAN

Man pages

addSiteName: Create an extra column in a data frame with the name of the...

Average: Average flux footprint

buildTimestamp: Build a timestamp

Calculate: Kormann and Meixner 2001 flux footprint model

calculateFootprint: Minimum argument footprint calculation

calculatePercentFootprint: Calculate Percent Footprint

cleanFluxes: Cleaning and de-spiking fluxes

cleanSecondVar: Clean a second variable

cleanVar: Clean a variable

cleanVarG: Clean a variable above a threshold

cleanVarL: Clean a variable below a threshold

continuity: Check timeseries continuity

createTimestamp: Create a time stamp

distClean: Distributional cleaning

exportFootprintPoints: Write footprint as points

fillTimestamp: Fill timestamp gaps

fluxes: Fluxes from Harwood forest

FREddyPro-package: Post-Processing EddyPro Full Output File

harwood: CSV EddyPro output file for Harwood forest

lue_model: Light use efficiency model

midpoints: Mid-point of a class

percentNA: Percent of NA values

percentQC: Percent of each QC

plotDaily: Plot average daily patterns

plotDiurnal: Plot average diurnal patterns

plotFingerprint: Plot a fingerprint graph

plotFootprint: Plot a tower footprint

plotMonthly: Plot monthly averages

plotQC: Plot using QC flags

plotSpectra: Plot spectra

plotTimeseries: Plot a time series plot

plotWindrose: Plot a wind rose

polar2cart: Polar to cartesian

qcClean: Clean using QC flag

readEddyPro: Read EddyPro full output

readFile: Read a file

removeDuplicates: Remove duplicates

removeOutliers: Remove outliers

rotateMatrix: Rotate a matrix

sdClean: Clean using standard deviation

spectra: Ensemble spectra from semi-enclosed IRGA at Harwood forest

ustarThreshold: Find the u* threshold

Files in this package

FREddyPro
FREddyPro/NAMESPACE
FREddyPro/data
FREddyPro/data/spectra.rda
FREddyPro/data/harwood.csv.gz
FREddyPro/data/datalist
FREddyPro/data/fluxes.rda
FREddyPro/R
FREddyPro/R/distClean.r
FREddyPro/R/fillTimestamp.r
FREddyPro/R/removeOutliers.r
FREddyPro/R/removeDuplicates.r
FREddyPro/R/plotQC.r
FREddyPro/R/calculateFootprint.r
FREddyPro/R/readEddyPro.r
FREddyPro/R/plotMonthly.r
FREddyPro/R/continuity.r
FREddyPro/R/functions.r
FREddyPro/R/cleanFluxes.r
FREddyPro/R/rotateMatrix.r
FREddyPro/R/writeFootprintPoints.r
FREddyPro/R/cleanVarL.r
FREddyPro/R/readFile.r
FREddyPro/R/plotFootprint.r
FREddyPro/R/percentQC.r
FREddyPro/R/plotDiurnal.r
FREddyPro/R/plotSpectra.r
FREddyPro/R/sdClean.r
FREddyPro/R/plotWindrose.r
FREddyPro/R/buildTimestamp.r
FREddyPro/R/cleanSecondVar.r
FREddyPro/R/qcClean.r
FREddyPro/R/cleanVarG.r
FREddyPro/R/midpoints.r
FREddyPro/R/addSiteName.r
FREddyPro/R/calculatePercentFootprint.r
FREddyPro/R/cleanVar.r
FREddyPro/R/polar2cart.r
FREddyPro/R/ustar_threshold.r
FREddyPro/R/percentNA.r
FREddyPro/R/plotTimeseries.r
FREddyPro/R/lue_model.r
FREddyPro/R/createTimestamp.r
FREddyPro/R/plotFingerprint.r
FREddyPro/R/footprint.r
FREddyPro/R/plotDaily.r
FREddyPro/MD5
FREddyPro/build
FREddyPro/build/partial.rdb
FREddyPro/DESCRIPTION
FREddyPro/man
FREddyPro/man/calculatePercentFootprint.Rd FREddyPro/man/readEddyPro.Rd FREddyPro/man/exportFootprintPoints.Rd FREddyPro/man/lue_model.Rd FREddyPro/man/cleanVar.Rd FREddyPro/man/calculateFootprint.Rd FREddyPro/man/polar2cart.Rd FREddyPro/man/ustarThreshold.Rd FREddyPro/man/cleanVarL.Rd FREddyPro/man/qcClean.Rd FREddyPro/man/percentQC.Rd FREddyPro/man/sdClean.Rd FREddyPro/man/plotTimeseries.Rd FREddyPro/man/spectra.Rd FREddyPro/man/buildTimestamp.Rd FREddyPro/man/rotateMatrix.Rd FREddyPro/man/plotQC.Rd FREddyPro/man/plotDiurnal.Rd FREddyPro/man/readFile.Rd FREddyPro/man/harwood.Rd FREddyPro/man/cleanFluxes.Rd FREddyPro/man/continuity.Rd FREddyPro/man/cleanVarG.Rd FREddyPro/man/plotMonthly.Rd FREddyPro/man/Average.Rd FREddyPro/man/createTimestamp.Rd FREddyPro/man/removeDuplicates.Rd FREddyPro/man/midpoints.Rd FREddyPro/man/fluxes.Rd FREddyPro/man/FREddyPro-package.Rd FREddyPro/man/cleanSecondVar.Rd FREddyPro/man/plotWindrose.Rd FREddyPro/man/Calculate.Rd FREddyPro/man/plotDaily.Rd FREddyPro/man/removeOutliers.Rd FREddyPro/man/plotFingerprint.Rd FREddyPro/man/percentNA.Rd FREddyPro/man/plotFootprint.Rd FREddyPro/man/distClean.Rd FREddyPro/man/plotSpectra.Rd FREddyPro/man/fillTimestamp.Rd FREddyPro/man/addSiteName.Rd

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