- Home
- CRAN
- FSA: Simple Fisheries Stock Assessment Methods
- BluegillJL: Capture histories (2 samples) of Bluegill from Jewett Lake,...
Capture histories (2 samples) of Bluegill from Jewett Lake, MI.
Description
Each line consists of the capture history over two samples of Bluegill (Lepomis macrochirus) in Jewett Lake (MI). This file contains the capture histories for only Bluegill larger thatn 6-in.
Format
A data frame with 277 observations on the following 2 variables.
- first
a numeric vector of indicator variables for the first sample (1=captured)
- second
a numeric vector of indicator variables for the second sample (1=captured)
Topic(s)
Population Size
Abundance
Mark-Recapture
Capture-Recapture
Petersen
Capture History
Source
From example 8.1 in Schneider, J.C. 1998. Lake fish population estimates by mark-and-recapture methods. Chapter 8 in Schneider, J.C. (ed.) 2000. Manual of fisheries survey methods II: with periodic updates. Michigan Department of Natural Resources, Fisheries Special Report 25, Ann Arbor. [Was (is?) from http://www.michigandnr.com/publications/pdfs/IFR/manual/SMII%20Chapter08.pdf.]
Examples
1 2 3 |
Want to suggest features or report bugs for rdrr.io? Use the GitHub issue tracker.
- addRadCap: Add a total radius-at-capture variable to a data.frame that...
- addZeroCatch: Adds zeroes for catches of species not collected in some...
- ageBias: Compute and view possible biases between paired sets of ages.
- agePrecision: Compute measures of precision among sets of ages.
- alkAgeDist: Proportions-at-age from an Age-Length Key
- alkIndivAge: Use an age-length key to assign age to individuals in the...
- alkMeanVar: Mean Values-at-age from an Age-Length Key
- alkPlot: Plots to visualize age-length keys.
- bcFuns: Creates a function for a specific back-calculation model.
- binCI: Confidence intervals for binomial probability of success.
- BluegillJL: Capture histories (2 samples) of Bluegill from Jewett Lake,...
- bootCase: Associated S3 methods for bootCase from car.
- BrookTroutTH: Catch-at-age for Tobin Harbor, Isle Royale Brook Trout.
- capHistConvert: Convert between capture history data.frame formats.
- capHistSum: Summarize capture histories in individual fish format.
- catchCurve: Mortality estimates from the descending limb of a catch...
- chapmanRobson: Computes Chapman-Robson estimates of S and Z.
- ChinookArg: Lengths and weights for Chinook Salmon from three locations...
- chooseColors: Create a list of colors from among a variety of color...
- CodNorwegian: Stock and recruitment data for Norwegian cod, 1937-1960.
- col2rgbt: Converts an R color to RGB (red/green/blue) including a...
- compIntercepts: Tests for significant differences among all pairs of...
- compSlopes: Tests for significant differences among all pairs of slopes...
- CutthroatAL: Capture histories (9 samples) of Cutthroat Trout from Auke...
- depletion: Computes the Leslie or Delury population estimate from catch...
- diags: Extract diagonals from a matrix.
- dunnTest: Dunn's Kruskal-Wallis Multiple Comparisons.
- Ecoli: Population growth of Escherichia coli.
- expandCounts: Repeat individual fish data (including lengths) from tallied...
- expandLenFreq: Expands a length frequency based on a subsample.
- extraTests: Likelihood ratio and extra sum-of-squares tests.
- fact2num: Converts "numeric" factor levels to numeric values.
- fishR: Opens web pages associated with the fishR website.
- fitPlot: Fitted model plot for an lm, glm, or nls object.
- FSA: Fisheries stock assessment methods and data.
- FSA-internals: Internal functions.
- fsaNews: Read news and changes for the 'FSA' package.
- FSAUtils: Capitalizes the first letter of first or all words in a...
- gConvert: Converts between types of measurements from calcified...
- geomean: Calculates the geometric mean or geometric standard...
- growthModels: Creates a function for a specific parameterization of the von...
- headtail: Shows rows from the head and tail of a data frame or matrix.
- hist.formula: Creates separate histograms by levels.
- histFromSum: Create a histogram from a frequency table.
- hoCoef: Performs a hypothesis test that a linear model parameter is...
- hyperCI: Confidence interval for population size (N) in hypergeometric...
- knitUtil: Specific utilities for use in a knitr document.
- ksTest: Kolmogorov-Smirnov Tests.
- lagratio: Ratio of lagged observations.
- lencat: Constructs length class/category variable.
- logbtcf: Constructs the correction-factor used when back-transforming...
- lwCompPreds: Constructs plots of predicted weights at given lengths among...
- mapvalues: Replace specified values in a vector or factor with new...
- metaM: Estimate natural mortality from a variety of empirical...
- Mirex: Mirex concentration, weight, capture year, and species of...
- mrClosed: Estimate initial population size for single or multiple...
- mrOpen: Jolly-Seber analysis from multiple mark-recapture events from...
- nlsBoot: Associated S3 methods for nlsBoot from nlstools.
- nlsTracePlot: Adds model fits from nls iterations to active plot.
- oddeven: Determine if a number is odd or even.
- perc: Computes the percentage of values in a vector less than or...
- PikeNY: Summarized multiple mark-recapture data for all Northern Pike...
- PikeNYPartial1: Capture histories (4 samples), in capture history format, of...
- plotBinResp: Plots a binary response variable versus a quantitative...
- poiCI: Confidence interval for Poisson counts.
- psdAdd: Creates a vector of Gabelhouse lengths for each species in an...
- psdCalc: Convenience function for calculating PSD-X and PSD X-Y...
- psdCI: Compute confidence intervals for PSD-X and PSD X-Y values.
- PSDlit: Gabelhouse five-cell length categories for various species.
- psdPlot: Length-frequency histogram with Gabelhouse lengths...
- psdVal: Finds Gabelhouse lengths (for PSD calculations) for a...
- rcumsum: Computes the prior to or reverse cumulative sum of a vector.
- removal: Population estimates for k-, 3-, or 2-pass removal data.
- residPlot: Construct a residual plot from lm or nls objects.
- Schnute: The four-parameter growth function from Schnute (1981).
- se: Computes standard error of the mean.
- SMBassLS: Catch-effort data for Little Silver Lake (Ont) Smallmouth...
- SMBassWB: Growth increment data for West Bearskin Lake, MN, Smallmouth...
- SpotVA1: Age and length of spot.
- srStarts: Finds reasonable starting values for parameters in specific...
- stockRecruitment: Creates a function for a specific parameterization of a...
- Subset: Subsets/filters a data frame and drops the unused levels.
- Summarize: Summary statistics for a numeric variable.
- sumTable: Creates a one- or two-way table of summary statistics.
- tictactoe: Construct a base tic-tac-toe plot for presenting...
- validn: Finds the number of valid (non-NA) values in a vector.
- vbStarts: Find reasonable starting values for a von Bertalanffy growth...
- WhitefishLC: Assigned ages from two readers on three structures for Lake...
- WR79: Ages and lengths for a hypothetical sample from Westerheim...
- wrAdd: Computes a vector of relative weights specific to a species...
- WSlit: All known standard weight equations.
- wsVal: Finds standard weight equation coefficients for a particular...