View source: R/FateID_functions.R
filterset | R Documentation |
This function discards lowly expressed genes from the expression data frame.
filterset(x, n = NULL, minexpr = 2, minnumber = 1)
x |
expression data frame with genes as rows and cells as columns. Gene IDs should be given as row names and cell IDs should be given as column names. |
n |
ordered vector of cell IDs to be included. Cell IDs need to be column names of |
minexpr |
positive real number. This is the minimum expression required for at least |
minnumber |
positive integer number. This is the minimum number of cells in which a gene needs to be expressed at least at a level of |
Reduced expression data frame with genes as rows and cells as columns in the same order as in n
.
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