PD_defict: Title Calculate the amount of phylogenetic deficit in...
In FishPhyloMaker: Phylogenies for a List of Finned-Ray Fishes
Description
Usage
Arguments
Value
See Also
Description
Title Calculate the amount of phylogenetic deficit in assemblages
Usage
1
Arguments
phylo
Phylogenetic tree in newick format, can be an object from FishPhyloMaker function
data
A data frame containing the classification informing the level of insertions. This can be obtained
from FishPhyloMaker function
level
Character indicating which level must be considered in the calculation of PD deficit.
default is "Congeneric_insertion"
Value
A scalar containing the value of PD deficit for the level chosen
See Also
FishPhyloMaker for phylogeny and data frame containing the classification of insertions
FishPhyloMaker documentation built on Sept. 15, 2021, 9:09 a.m.
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Description Usage Arguments Value See Also
Description
Title Calculate the amount of phylogenetic deficit in assemblages
Usage
1 |
Arguments
phylo |
Phylogenetic tree in newick format, can be an object from |
data |
A data frame containing the classification informing the level of insertions. This can be obtained
from |
level |
Character indicating which level must be considered in the calculation of PD deficit. default is "Congeneric_insertion" |
Value
A scalar containing the value of PD deficit for the level chosen
See Also
FishPhyloMaker for phylogeny and data frame containing the classification of insertions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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