Description Usage Arguments Value Examples
Generate a list of species Auxiliary function to obtain taxonomic classification and check the names of species present in species pool
1 | FishTaxaMaker(data, allow.manual.insert = TRUE)
|
data |
A character vector with species names or a community matrix with species names in columns |
allow.manual.insert |
Logical, if TRUE (default), the user must type the names of Family and Order of species not found in Fishbase |
List with three elements.
1 2 3 4 5 6 | - A data frame containing the taxonomic classification of valid species accordingy to Fishbase
- A data frame with three columns containing the name of species (s), the Family (f) and Order (o) that can be used in
FishPhyloMaker function
- A character vector containing all names of species that was not find in Fishbase
|
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 | ## Not run:
data(neotropical_comm)
data_comm <- neotropical_comm[, -c(1, 2)]
taxon_data <- FishTaxaMaker(data_comm, allow.manual.insert = TRUE)
Characidae
Characiformes
Characidae
Characiformes
Characidae
Characiformes
Loricariidae
Siluriformes
Characidae
Characiformes
Cichlidae
Cichliformes
Crenuchidae
Characiformes
Gymnotidae
Gymnotiformes
Loricariidae
Siluriformes
Loricariidae
Siluriformes
Loricariidae
Siluriformes
Loricariidae
Siluriformes
Heptapteridae
Siluriformes
Characidae
Characiformes
Loricariidae
Siluriformes
Characidae
Characiformes
## End(Not run)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.