bic.4.toy.network: List containing the results from the application of the...
In FunctionalNetworks: An algorithm for gene and gene set network inference

Description Usage Format Details Author(s) References Examples

This dataset contains a list with the results from the application of the function bic.generation for a toy dataset based on the breastCancerVDX dataset. It is based on the results from the application of the function data.generation. See the package Vignette for a detailed usage.

1	data(bic.4.toy.network)

A list containing the information in the following way:

BIC.Gene.0.Pred A vector with the BIC calculations were genes are set as objective nodes in the network with no source gene.
BIC.Gene.1.Pred A matrix with the BIC calculations were genes are set as objective nodes in the network with one source gene.
BIC.Set.0.Pred A vector with the BIC calculations were gene sets are set as objective nodes in the network with no source gene sets.
BIC.Set.1.Pred A matrix with the BIC calculations were gene sets are set as objective nodes in the network with one source gene set.

This data set is calculated for the particular case were it is of interest to obtain the Functional Network for a toy dataset based on the breastCancerVDX dataset and the annotation system chosen is the MF from GO. The phenotype chose are the samples with Estrogen receptor negative (ER-) and the minimum number of genes on each MF is at least 5.

A. Quiroz-Zarate. aquiroz@jimmy.harvard.edu

Quiroz-Zarate A, Haibe-Kains, B and Quackenbush J (2013). "Manuscript in preparation".