List containing the results from the application of the function data.generation for a toy dataset based on the breastCancerVDX dataset

Description

This dataset contains a list with the results from the application of the function data.generation for a toy dataset based on the breastCancerVDX dataset. It is based on the Molecular Functions ontology from GO by the MSigBD. Only MF with at least 5 genes were considered. See the package Vignette for a detailed usage.

Usage

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Format

A list containing the information in the following way:

Details

This data set is calculated for the particular case were it is of interest to obtain the Functional Network for a toy dataset based on the breastCancerVDX dataset and the annotation system chosen is the MF from GO. The phenotype chose are the samples with Estrogen receptor negative (ER-).

Author(s)

A. Quiroz-Zarate. aquiroz@jimmy.harvard.edu

References

Quiroz-Zarate A, Haibe-Kains, B and Quackenbush J (2013). "Manuscript in preparation".

Examples

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# See Package Vignette for a detailed example of the usage of this dataset
# vigenette("FunctionalNetworks")

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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