GERGM: Estimation and Fit Diagnostics for Generalized Exponential Random Graph Models

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Estimation and diagnosis of the convergence of Generalized Exponential Random Graph Models via Gibbs sampling or Metropolis Hastings with exponential down weighting.

Author
Matthew J. Denny <mdenny@psu.edu>, James D. Wilson <jdwilson1212@gmail.com>, Skyler Cranmer <cranmer.12@osu.edu >, Bruce A. Desmarais <bdesmarais@psu.edu>, Shankar Bhamidi <bhamidi@email.unc.edu>
Date of publication
2016-08-07 16:09:09
Maintainer
Matthew J. Denny <mdenny@psu.edu>
License
GPL-3
Version
0.10.0
URLs

View on CRAN

Man pages

calculate_network_statistics
A Function to estimate calculate (weighted) network...
conditional_edge_prediction
A Function to predict edge weights from a GERGM fit object.
conditional_edge_prediction_correlation_plot
A Function generate a scatter plot of observed vs predicted...
conditional_edge_prediction_plot
A Function generate edge prediction plots.
Estimate_Plot
Generate parameter estimate plot with 95 percent CI's from a...
find_example_simulated_network
Find an example simulated network that is the minimum...
gergm
A Function to estimate a GERGM.
GOF
Generate Goodness Of Fit plot from a GERGM object.
hysteresis
A function to automatically generate hysteresis plots for all...
hysteresis_plot
Generate hysteresis plots for theta parameter estimates
parallel_gergm
A Function to estimate a number of GERGMs in parallel, each...
plot_network
Plots of value-edged networks.
simulate_networks
A Function to simulate networks from a GERGM with given theta...
Trace_Plot
Generate trace plot of network density from a GERGM object.

Files in this package

GERGM
GERGM/tests
GERGM/tests/testthat.R
GERGM/tests/testthat
GERGM/tests/testthat/test_slackr_integration.R
GERGM/tests/testthat/test_gergm.R
GERGM/tests/testthat/test_parallel_gergm.R
GERGM/tests/testthat/test_experimental_features.R
GERGM/tests/testthat/test_hysteresis.R
GERGM/tests/testthat/test_node_subset_statistics.R
GERGM/tests/testthat/test_gergm_with_downweighting.R
GERGM/src
GERGM/src/Makevars
GERGM/src/Extended_Metropolis_Hastings_Sampler.cpp
GERGM/src/weighted_mple_objective.cpp
GERGM/src/frobenius_norm.cpp
GERGM/src/Makevars.win
GERGM/src/RcppExports.cpp
GERGM/NAMESPACE
GERGM/R
GERGM/R/gergm.R
GERGM/R/Transform_Correlations.R
GERGM/R/hysteresis_plot.R
GERGM/R/Optimize_Proposal_Variance.R
GERGM/R/GERGM_Class.R
GERGM/R/calculate_h_statistics.R
GERGM/R/hysteresis.R
GERGM/R/find_example_simulated_networks.R
GERGM/R/Estimate_Plot.R
GERGM/R/conditional_edge_prediction_correlation_plot.R
GERGM/R/Parse_Undirected_Structural_Terms.R
GERGM/R/Add_Intercept_Term.R
GERGM/R/Run_MPLE.R
GERGM/R/Thin_Statistic_Samples.R
GERGM/R/selected_rows_functions.R
GERGM/R/conditional_edge_prediction_plot.R
GERGM/R/grid_search_theta.R
GERGM/R/Update_Lambda_Estimates.R
GERGM/R/calculate_additional_GOF_statistics.R
GERGM/R/Helper_Functions.R
GERGM/R/Trace_Plot.R
GERGM/R/MCMCMLE.R
GERGM/R/hysteresis_parallel.R
GERGM/R/simulate_networks.R
GERGM/R/Simulate_GERGM.R
GERGM/R/calculate_standard_errors.R
GERGM/R/parallel_gergm.R
GERGM/R/Log_Likelihood_and_MPLE_Objective.R
GERGM/R/RcppExports.R
GERGM/R/Create_GERGM_Object_From_Formula.R
GERGM/R/Package_Documentation.R
GERGM/R/Gibbs_Sampler.R
GERGM/R/Estimate_GERGM.R
GERGM/R/plot_network.R
GERGM/R/Symmetrize_Network.R
GERGM/R/optimize_initialization.R
GERGM/R/GOF_statistic_names.R
GERGM/R/GOF.R
GERGM/R/prepare_parameter_estimate_data.R
GERGM/R/Network_Statistic_Calculation_Functions.R
GERGM/R/Convert_Simulated_Networks_To_Observed_Scale.R
GERGM/R/extended_MPLE.R
GERGM/R/calculate_network_statistics.R
GERGM/R/single_gergm_specification.R
GERGM/R/Prepare_Covariates.R
GERGM/R/conditional_edge_prediction.R
GERGM/R/Parse_Formula_Object.R
GERGM/R/zzz.R
GERGM/R/Create_GERGM_Object.R
GERGM/README.md
GERGM/MD5
GERGM/DESCRIPTION
GERGM/man
GERGM/man/hysteresis_plot.Rd
GERGM/man/conditional_edge_prediction.Rd
GERGM/man/gergm.Rd
GERGM/man/plot_network.Rd
GERGM/man/calculate_network_statistics.Rd
GERGM/man/conditional_edge_prediction_correlation_plot.Rd
GERGM/man/GOF.Rd
GERGM/man/conditional_edge_prediction_plot.Rd
GERGM/man/Estimate_Plot.Rd
GERGM/man/find_example_simulated_network.Rd
GERGM/man/hysteresis.Rd
GERGM/man/simulate_networks.Rd
GERGM/man/parallel_gergm.Rd
GERGM/man/Trace_Plot.Rd