Man pages for GMCM
Fast Estimation of Gaussian Mixture Copula Models
| as.theta | Coerce a list to a theta object |
| choose.theta | Heuristically chosen starting value of theta |
| classify | Classify observations |
| colSds | Row and column standard deviations |
| cummean | Cumulative mean values |
| dgmcm.loglik | Probability, density, and likelihood functions of the... |
| dmvnormal | Multivariate Gaussian density and simulation |
| EMAlgorithm | EM algorithm for Gaussian mixture models |
| EStep | Steps of the EM algorithm for a Gaussian Mixture model |
| fit.full.GMCM | Estimate GMCM parameters of the general model |
| fit.meta.GMCM | Estimate GMCM parameters of the special model |
| freshVsFrozen | Reproducibility between Fresh and Frozen B-cell subtypes |
| full2meta | Convert between parameter formats |
| get.IDR | Posterior class probabilities, local, and adjusted IDRs. |
| GMCM-package | Fast optimization of Gaussian Mixture Copula Models |
| goodness.of.fit | Goodness of fit for the general GMCM |
| is.theta | Check if parameters are valid |
| logit | Logit and inverse logit transforms |
| plot.theta | Plotting method for "theta" objects |
| print.theta | Print method for theta class |
| PseudoEMAlgorithm | EM-like algorithm for the GMCM |
| rho.transform | Transformation of the correlation to real line and its... |
| rtheta | Get random parameters for the Gaussian mixture (copula) model |
| runGMCM | Run the GMCM shiny application |
| SimulateGMCMData | Simulation from Gaussian mixture (copula) models |
| summary.theta | Summary method for theta class |
| tt | Reparametrization of GMCM parameters |
| u133VsExon | Reproducibility between U133 plus 2 and Exon microarrays |
| Uhat | Fast ranking function |
