GOplot: Visualization of Functional Analysis Data
Version 1.0.2

Implementation of multilayered visualizations for enhanced graphical representation of functional analysis data. It combines and integrates omics data derived from expression and functional annotation enrichment analyses. Its plotting functions have been developed with an hierarchical structure in mind: starting from a general overview to identify the most enriched categories (modified bar plot, bubble plot) to a more detailed one displaying different types of relevant information for the molecules in a given set of categories (circle plot, chord plot, cluster plot, Venn diagram, heatmap).

AuthorWencke Walter [aut, cre], Fatima Sanchez-Cabo [aut]
Date of publication2016-03-30 20:35:02
MaintainerWencke Walter <wencke.walter@arcor.de>
LicenseGPL-2
Version1.0.2
URL https://github.com/wencke/wencke.github.io
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("GOplot")

Getting started

README.md
GOplot 1.0.2"

Popular man pages

chord_dat: Creates a binary matrix.
circle_dat: Creates a plotting object.
EC: Transcriptomic information of endothelial cells.
GOBubble: Bubble plot.
GOChord: Displays the relationship between genes and terms.
GOCluster: Circular dendrogram.
GOVenn: Venn diagram of differentially expressed genes.
See all...

All man pages Function index File listing

Man pages

chord_dat: Creates a binary matrix.
circle_dat: Creates a plotting object.
EC: Transcriptomic information of endothelial cells.
GOBar: Z-score coloured barplot.
GOBubble: Bubble plot.
GOChord: Displays the relationship between genes and terms.
GOCircle: Circular visualization of the results of a functional...
GOCluster: Circular dendrogram.
GOHeat: Displays heatmap of the relationship between genes and terms.
GOVenn: Venn diagram of differentially expressed genes.
reduce_overlap: Eliminates redundant terms.

Functions

EC Man page
GOBar Man page Source code
GOBubble Man page Source code
GOChord Man page Source code
GOCircle Man page Source code
GOCluster Man page Source code
GOHeat Man page Source code
GOVenn Man page Source code
bezier Source code
check_chord Source code
chord_dat Man page Source code
circleFun Source code
circle_dat Man page Source code
draw_table Source code
get_overlap Source code
get_overlap2 Source code
reduce_overlap Man page Source code

Files

inst
inst/CITATION
inst/doc
inst/doc/GOplot_vignette.Rmd
inst/doc/GOplot_vignette.R
inst/doc/GOplot_vignette.html
NAMESPACE
NEWS.md
data
data/EC.rda
R
R/Helper.R
R/GOVenn.R
R/GOCluster.R
R/GOHeat.R
R/GOCore.R
vignettes
vignettes/GOBubble2.png
vignettes/GOBubble3.png
vignettes/GOBubble1.png
vignettes/GOBubble4.png
vignettes/Titel.png
vignettes/GOChord1.png
vignettes/GOVenn.png
vignettes/GOplot_vignette.Rmd
vignettes/GOCluster.png
vignettes/GOBar.png
vignettes/GOCirc.png
vignettes/GOHeat_nolfc.png
vignettes/GOplot.css
vignettes/GOCluster2.png
vignettes/GOHeat_lfc.png
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/chord_dat.Rd
man/EC.Rd
man/GOCluster.Rd
man/GOCircle.Rd
man/GOHeat.Rd
man/reduce_overlap.Rd
man/circle_dat.Rd
man/GOBar.Rd
man/GOBubble.Rd
man/GOChord.Rd
man/GOVenn.Rd
GOplot documentation built on May 19, 2017, 9:57 p.m.