GOplot: Visualization of Functional Analysis Data

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Implementation of multilayered visualizations for enhanced graphical representation of functional analysis data. It combines and integrates omics data derived from expression and functional annotation enrichment analyses. Its plotting functions have been developed with an hierarchical structure in mind: starting from a general overview to identify the most enriched categories (modified bar plot, bubble plot) to a more detailed one displaying different types of relevant information for the molecules in a given set of categories (circle plot, chord plot, cluster plot, Venn diagram, heatmap).

Author
Wencke Walter [aut, cre], Fatima Sanchez-Cabo [aut]
Date of publication
2016-03-30 20:35:02
Maintainer
Wencke Walter <wencke.walter@arcor.de>
License
GPL-2
Version
1.0.2
URLs

View on CRAN

Man pages

chord_dat
Creates a binary matrix.
circle_dat
Creates a plotting object.
EC
Transcriptomic information of endothelial cells.
GOBar
Z-score coloured barplot.
GOBubble
Bubble plot.
GOChord
Displays the relationship between genes and terms.
GOCircle
Circular visualization of the results of a functional...
GOCluster
Circular dendrogram.
GOHeat
Displays heatmap of the relationship between genes and terms.
GOVenn
Venn diagram of differentially expressed genes.
reduce_overlap
Eliminates redundant terms.

Files in this package

GOplot
GOplot/inst
GOplot/inst/CITATION
GOplot/inst/doc
GOplot/inst/doc/GOplot_vignette.Rmd
GOplot/inst/doc/GOplot_vignette.R
GOplot/inst/doc/GOplot_vignette.html
GOplot/NAMESPACE
GOplot/NEWS.md
GOplot/data
GOplot/data/EC.rda
GOplot/R
GOplot/R/Helper.R
GOplot/R/GOVenn.R
GOplot/R/GOCluster.R
GOplot/R/GOHeat.R
GOplot/R/GOCore.R
GOplot/vignettes
GOplot/vignettes/GOBubble2.png
GOplot/vignettes/GOBubble3.png
GOplot/vignettes/GOBubble1.png
GOplot/vignettes/GOBubble4.png
GOplot/vignettes/Titel.png
GOplot/vignettes/GOChord1.png
GOplot/vignettes/GOVenn.png
GOplot/vignettes/GOplot_vignette.Rmd
GOplot/vignettes/GOCluster.png
GOplot/vignettes/GOBar.png
GOplot/vignettes/GOCirc.png
GOplot/vignettes/GOHeat_nolfc.png
GOplot/vignettes/GOplot.css
GOplot/vignettes/GOCluster2.png
GOplot/vignettes/GOHeat_lfc.png
GOplot/README.md
GOplot/MD5
GOplot/build
GOplot/build/vignette.rds
GOplot/DESCRIPTION
GOplot/man
GOplot/man/chord_dat.Rd
GOplot/man/EC.Rd
GOplot/man/GOCluster.Rd
GOplot/man/GOCircle.Rd
GOplot/man/GOHeat.Rd
GOplot/man/reduce_overlap.Rd
GOplot/man/circle_dat.Rd
GOplot/man/GOBar.Rd
GOplot/man/GOBubble.Rd
GOplot/man/GOChord.Rd
GOplot/man/GOVenn.Rd