reduce_overlap: Eliminates redundant terms.

In GOplot: Visualization of Functional Analysis Data

Description

The function eliminates all terms with a gene overlap >= set threshold (overlap) The reduced dataset can be used to improve the readability of plots such as GOBubble and GOBar

Usage

reduce_overlap(data, overlap)

Arguments

data	A data frame created with circle_dat.
overlap	Skalar indicating the threshold for gene overlap (default = 0.75).

Details

The function is currently very slow.

Examples

## Not run: 
# Load the included dataset
data(EC)

# Building the circ object
circ <- circle_dat(EC$david, EC$genelist)

# Eliminate redundant terms
reduced_circ <- reduce_overlap(circ)

# Plot reduced data
GOBubble(reduced_circ)


## End(Not run)

Example output

Loading required package: ggplot2
Loading required package: ggdendro
Loading required package: gridExtra
Loading required package: RColorBrewer

GOplot documentation built on May 2, 2019, 8:57 a.m.