GPseq: gpseq: Using the generalized Poisson distribution to model sequence read counts from high throughput sequencing experiments

Some functions for modeling sequence read counts as a generalized poisson model and to use this model for detecting differentially expressed genes in different conditions and differentially spliced exons.

Install the latest version of this package by entering the following in R:
install.packages("GPseq")
AuthorSudeep Srivastava, Liang Chen
Date of publication2011-07-06 18:55:51
MaintainerSudeep Srivastava <sudeepsr@usc.edu>
LicenseGPL-2
Version0.5

View on CRAN

Functions

calc_chisq_statistic Man page
estimate_differential_expression Man page
estimate_differential_splicing Man page
estimate_exon_gene_expression Man page
exons Man page
generalized_poisson_likelihood Man page
genes Man page
likelihood_ratio_generalized_poisson_exon_gene Man page
likelihood_ratio_poisson_exon_gene Man page
likelihood_ratio_tissue_generalized_poisson Man page
likelihood_ratio_tissue_poisson Man page
perform_permutation_de Man page
perform_permutation_ds Man page
reads Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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